Locus 6783

Sequence ID 2L_DroMel_CAF1
Location 18,956,026 – 18,956,121
Length 95
Max. P 0.863807
window10826

overview

Window 6

Location 18,956,026 – 18,956,121
Length 95
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 77.56
Mean single sequence MFE -30.93
Consensus MFE -18.75
Energy contribution -18.83
Covariance contribution 0.08
Combinations/Pair 1.37
Mean z-score -1.84
Structure conservation index 0.61
SVM decision value 0.84
SVM RNA-class probability 0.863807
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18956026 95 - 22407834
-AAGACCAAGAAACCCACAACAGCUGCCCAUCAAGCGGCCCAACAACUAAAUCUCAUGGCUGCCGCGGUAGCUGCACAAGCUGAAGAAGC------UGCCAA
-...................((((((((......((((((((..............)))..)))))))))))))....((((.....)))------)..... ( -25.44)
>DroPse_CAF1 10755 101 - 1
-ACGACCAAGAAGCCAACGACUGCUGCCCACCAGGCGGCCCAGCAGCUCAACAUUAUGGCCGCUGCAGUGGCUGCCCAGGCUCAGGAGGCCAAGGCAGCCGA
-..................(((((((((.....))))))...((((((((......)))..))))))))(((((((..((((.....))))..))))))).. ( -40.20)
>DroSec_CAF1 11053 95 - 1
-AAGACCAAGAAACCCACAACAGCUGCCCAUCAAGCGGCCCAACAACUAAAUCUCAUGGCUGCCGCGGUAGCUGCACAAGCUGAAGAAGC------UGCCAA
-...................((((((((......((((((((..............)))..)))))))))))))....((((.....)))------)..... ( -25.44)
>DroWil_CAF1 11486 102 - 1
AGCCACCAAGAAGCCCACAUCGGCAGCUCAUCAGGCGGCACAACAAUUGAAUAUAAUGGCUGCUGCAGUUGCUGCCCAGGCACAGGAGGCGGAAUCGGCAAA
.(((.((.....(((......((((((......((((((.((..............))))))))......))))))..)))...)).)))............ ( -30.74)
>DroYak_CAF1 10998 95 - 1
-AAGACCAAGAAACCGACCACUGCUGCCCAUCAAGCGGCCCAACAACUAAAUCUCAUGGCUGCUGCGGUAGCUGCACAAGCUGAAGAAGC------UGCCCA
-.....................((((((.....(((((((.................)))))))..))))))......((((.....)))------)..... ( -23.53)
>DroPer_CAF1 10749 101 - 1
-ACGACCAAGAAGCCAACGACUGCUGCCCACCAGGCGGCCCAGCAGCUCAACAUUAUGGCCGCUGCAGUGGCUGCCCAGGCUCAAGAGGCCAAGGCAGCCGA
-..................(((((((((.....))))))...((((((((......)))..))))))))(((((((..((((.....))))..))))))).. ( -40.20)
>consensus
_AAGACCAAGAAACCCACAACUGCUGCCCAUCAAGCGGCCCAACAACUAAAUAUCAUGGCUGCUGCAGUAGCUGCACAAGCUCAAGAAGC______UGCCAA
......................((((((.....(((((((.................)))))))..)))))).(((...(((.....)))......)))... (-18.75 = -18.83 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:48 2006