Locus 6782

Sequence ID 2L_DroMel_CAF1
Location 18,952,885 – 18,952,980
Length 95
Max. P 0.878829
window10825

overview

Window 5

Location 18,952,885 – 18,952,980
Length 95
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 83.02
Mean single sequence MFE -32.93
Consensus MFE -22.00
Energy contribution -22.78
Covariance contribution 0.78
Combinations/Pair 1.19
Mean z-score -3.29
Structure conservation index 0.67
SVM decision value 0.91
SVM RNA-class probability 0.878829
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18952885 95 - 22407834
GAAGACAUGGAAGUGAAUCAAAAAUGGAACUGGGACACCAAGCCAAUUCUGGUCAAAUGCGGAGGAUUCUCCUCGCAAUUGGCCAAGAAUGUCAC
...(((((................(((...(((....)))..)))..(((((((((.((((.(((.....))))))).)))))).)))))))).. ( -32.20)
>DroPse_CAF1 6802 92 - 1
GAGGAGGAGAAUGAGAACCAGA-AUCGACCGGAGCAGCCCCGC--GUGCUUGUCAAAUGCGGUGGCUUCUCUUCCCAAUUGGCGCACAAUGUGGA
(.(((((((((...(..((.(.-.....).))..).(((((((--((.........)))))).)))))))))))))......(((.....))).. ( -29.50)
>DroSec_CAF1 7916 95 - 1
GAAGACAUGGAGGUGAACCAAAAAUGGAACUGGGACUCCAAGCCAAUUCUGGUCAAAUGCGGAGGAUUCUCCUCGCAAUUGGCCAAGAAUGUCAC
...(((.(((.((....)).....((((........))))..)))(((((((((((.((((.(((.....))))))).)))))).)))))))).. ( -34.90)
>DroSim_CAF1 7478 95 - 1
GAAGACAUGGAGGUGAACCAAAAAUGGAACUGGGACUCCAAGCCAAUUCUGGUCAAAUGCGGAGGAUUCUCCUCGCAAUUGGCCAAGAAUGUCAC
...(((.(((.((....)).....((((........))))..)))(((((((((((.((((.(((.....))))))).)))))).)))))))).. ( -34.90)
>DroEre_CAF1 15493 95 - 1
GAAGACAUGAAUGAUAGCGAAAAAUGGAACUGGGACACCAAGCGAAUUCUGGUCAAGUGCGGAGGAUUCUCCUCGCAAUUGGCCAGGAAUGUCUC
..((((((......................(((....)))......((((((((((.((((.(((.....))))))).)))))))))))))))). ( -32.90)
>DroYak_CAF1 7848 95 - 1
GAAGACAUGAAGGAGAACCAAAACUGGAACUGGGACACCAAACCAAUUCUGGUCAAAUGCGGAGGAUUCUCCUCGCAAUUGGCCAGGAAUGUGAA
....((((...((....(((....)))...(((....)))..))..((((((((((.((((.(((.....))))))).))))))))))))))... ( -33.20)
>consensus
GAAGACAUGAAGGAGAACCAAAAAUGGAACUGGGACACCAAGCCAAUUCUGGUCAAAUGCGGAGGAUUCUCCUCGCAAUUGGCCAAGAAUGUCAC
...(((..................(((...(((....)))..)))(((((((((((.((((.(((.....))))))).)))))).)))))))).. (-22.00 = -22.78 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:47 2006