Locus 6781

Sequence ID 2L_DroMel_CAF1
Location 18,952,333 – 18,952,434
Length 101
Max. P 0.598530
window10824

overview

Window 4

Location 18,952,333 – 18,952,434
Length 101
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 69.14
Mean single sequence MFE -30.26
Consensus MFE -10.23
Energy contribution -9.82
Covariance contribution -0.41
Combinations/Pair 1.40
Mean z-score -1.86
Structure conservation index 0.34
SVM decision value 0.13
SVM RNA-class probability 0.598530
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18952333 101 - 22407834
GAGGCAGAGGCAGUCACCGAAUUAGUACUGGACAACUUUCCGGAUGCCAAAUUCUGGGUCUCCCUGCAGUGCAUGGUGAGUAA-----UA-UCGCAAA-AAACAAUAA
...((((.((.((.(.(((((((.((((((((......))))).)))..))))).))).)))))))).((.....((((....-----..-))))...-..))..... ( -28.30)
>DroPse_CAF1 6249 93 - 1
GAGGCACUCGCCAUCACUGAAAGCAUACUCGAGAACUAUACGAAUGUCAAGUUUUGGGUAUCCUUUCAGUGCAAGGUGAGUUG-----UG-CU---------UUGGAU
((((((((((((..(((((((((.((((((.((((((..((....))..)))))))))))).)))))))))...)))))...)-----))-))---------)).... ( -37.40)
>DroSec_CAF1 7363 102 - 1
GAAGCAGAGGCAGUCACCGAAUUAGUACUGGACAACUUUCCGGAUGCCAAAUUCUGGGUCUCCCUGCAGUGCAUGGUCAGUAA-----UA-UCGGAAAAAAAAUGGCG
...((((.((.((.(.(((((((.((((((((......))))).)))..))))).))).))))))))........((((....-----..-............)))). ( -25.17)
>DroSim_CAF1 6926 101 - 1
GAAGCAGAGGCAGUCACCGAAUUAGUACUGGACAACUUUCCGGAUGCCAAAUUCUGGGUCUCCCUGCAGUGCAUGGUGAGUAA-----UA-UAGGAAA-AAAAUGGAG
...((((.((.((.(.(((((((.((((((((......))))).)))..))))).))).))))))))................-----..-.......-......... ( -23.40)
>DroAna_CAF1 9436 104 - 1
GAGGCAGAGGCUGUUACCGAACUUGUACUGGAUUCCUAUGAGGGUGUCAAUUUCUGGGUGUCCUUCCAGUGUCAGGUGAGUGUGGAAGACAUCAACUG----UUGAAG
..(((((..(.((((.(((.((((((((((((........((((..((........))..))))))))))).))))).....)))..)))).)..)))----)).... ( -29.90)
>DroPer_CAF1 6242 93 - 1
GAGGCACUCGCCAUCACUGAAAGCAUACUCGAGAACUAUACGAAUGUCAAGUUUUGGGUAUCCUUUCAGUGCAAGGUGAGUUG-----UG-CU---------UUGGAU
((((((((((((..(((((((((.((((((.((((((..((....))..)))))))))))).)))))))))...)))))...)-----))-))---------)).... ( -37.40)
>consensus
GAGGCAGAGGCAGUCACCGAAUUAGUACUGGACAACUAUCCGGAUGCCAAAUUCUGGGUCUCCCUGCAGUGCAAGGUGAGUAA_____UA_UCG_AAA____UUGGAG
...((....))..(((((......((((((...........((((.....)))).(((...)))..))))))..)))))............................. (-10.23 =  -9.82 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:46 2006