| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,944,946 – 18,945,038 |
| Length | 92 |
| Max. P | 0.697854 |
| Location | 18,944,946 – 18,945,038 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 94.93 |
| Mean single sequence MFE | -22.28 |
| Consensus MFE | -20.42 |
| Energy contribution | -21.05 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.697854 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18944946 92 - 22407834 UGGGAUCUUUCAAAAAUUUGUAAGUAAACAAAGCCAAGAACGAGGACACACCAGUAUAAAUGGUGGUCUCUUUUUGAGUGCUGAUCUCGAUC .((((((.(((((((((((((......))))).........((((...(((((.......))))).))))))))))))....)))))).... ( -25.90) >DroSec_CAF1 70575 92 - 1 UGGGAUCUUUUACAAAUUUGUAUGUAAACAAAGCCAAGAACGAGGACACACUAGUAUAAAUGGUGGUCUCUUUUUGAGUGCUAAUCUCGAUC .(((((..((((((........))))))...(((((((((.((((...(((((.......))))).))))))))))...))).))))).... ( -20.70) >DroSim_CAF1 71498 92 - 1 UGGGAUCUUUUACAAAUUUGUAUGUAAACAAAGCCAAGAACGAGGACACACUAGUAUAAAUGGUGGUCUCUUUUUGAGUGCUGAUCUCGAUC .((((((.((((((........))))))...(((((((((.((((...(((((.......))))).))))))))))...))))))))).... ( -24.40) >DroYak_CAF1 69566 92 - 1 UUGGAUCGUUUAAAAACUUGUAUGUAAACAAAGCCAAGAACGAGGACACACUAGUAUAAAUCGUGGUCUCUUUUUGAGUGCUGAUCUCGAUC ((((((((((((............)))))..(((((((((.(((..(((.............)))..)))))))))...))))))).))).. ( -18.12) >consensus UGGGAUCUUUUAAAAAUUUGUAUGUAAACAAAGCCAAGAACGAGGACACACUAGUAUAAAUGGUGGUCUCUUUUUGAGUGCUGAUCUCGAUC (((((((..........((((......))))(((((((((.((((...(((((.......))))).))))))))))...))))))))))... (-20.42 = -21.05 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:45 2006