Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,981,330 – 1,981,450 |
Length | 120 |
Max. P | 0.506106 |
Location | 1,981,330 – 1,981,450 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.44 |
Mean single sequence MFE | -45.49 |
Consensus MFE | -36.69 |
Energy contribution | -36.38 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.22 |
Mean z-score | -1.37 |
Structure conservation index | 0.81 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506106 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1981330 120 - 22407834 GGGCGGCGGUCCUUGGCGGCGGUGGGCGAAGUCGCAGAAGAAGCACUUUUCGCUUUCCGCCUGGCGAACCUCGCCACUGGCACAUUUGUAGAUCGAUACCAAAACUAUUAAGCCCAAACC (((((.((((.......(((((..(((((((..((.......))...)))))))..))))).((((.....)))))))).)......(((......)))............))))..... ( -43.70) >DroSim_CAF1 7312 120 - 1 GGGCGGCGGUCCUUGGCGGCGGUGGGCGAAGUCGCAGAAGAAGCACUGCUCGCUUUCCGCCAGGCGAGCCUCGCCACUAGUACAUUUGUAGAUCGAUACCAAAACUAUGAAGCCCAAACC (((((((((..((((.((((((..(((((....((((........)))))))))..))))).).))))..))))).........((..(((.............)))..))))))..... ( -48.82) >DroEre_CAF1 7086 120 - 1 GGGCGGAGGUCCUUGGCGGCGGUGGGCGAAGUCGCAGAAGAAGCAUUUCUGGCCAUUCGCCUGCCGACUCUCGCUACUCGUACAAUUGUAGAUCGAUACCAAAACGAUGAGGCCCAAACC ((((((....)).(((((((((..((((((....((((((.....))))))....))))))..)))....))))))(((((......(((......))).......)))))))))..... ( -44.52) >DroYak_CAF1 7118 120 - 1 GGGCGGAGGUCCUUGGCGGCGGUGGGCGAAGUCGCAGAAGAAGCAUUUCUGGUCAUCCGCCUGCCGACCCUCGCCACUCGUACAAUUGUAGAUCGAUACCAAAACGAUGAGGCCCAAUCC ((((.((((...(((((((((((((.((((((.((.......))))))).).))).))))).))))).))))....(((((......(((......))).......)))))))))..... ( -44.92) >consensus GGGCGGAGGUCCUUGGCGGCGGUGGGCGAAGUCGCAGAAGAAGCACUUCUCGCCAUCCGCCUGCCGACCCUCGCCACUCGUACAAUUGUAGAUCGAUACCAAAACGAUGAAGCCCAAACC (((((((((...((((((((((..((((((((.((.......)))))))..)))..))))).)))))...)))))..((((......(((......)))....))))....))))..... (-36.69 = -36.38 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:41 2006