Locus 6779

Sequence ID 2L_DroMel_CAF1
Location 18,943,916 – 18,944,026
Length 110
Max. P 0.530632
window10822

overview

Window 2

Location 18,943,916 – 18,944,026
Length 110
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 87.27
Mean single sequence MFE -27.74
Consensus MFE -18.18
Energy contribution -18.82
Covariance contribution 0.64
Combinations/Pair 1.15
Mean z-score -2.03
Structure conservation index 0.66
SVM decision value -0.01
SVM RNA-class probability 0.530632
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18943916 110 + 22407834
GUCGAG-------CUCCCAUUCCACAUCACCAUUACCAUUACCUUAUGCCCAUUCCCCAUUCCUUGGGC-CACCGUUCCUCGGAAUGGCUAAAAUUAACUCGCCAUCGAUGGGCGGGU
......-------...(((((((........................(((((............)))))-....(.....)))))))).........(((((((.......))))))) ( -26.60)
>DroSec_CAF1 69570 111 + 1
GUCGGG-------CUCCCAUUCCACAUCACGAUUACCAUUACCUUAUGCCCAUUCCCCAUUCCUUGGGCCCAUCGUUGCUCGGAAUGGCUAAAAUUAACUCGCCAUCAAUCGGCGUGU
...(((-------(.................................)))).....(((((((..((((........))))))))))).........((.((((.......)))).)) ( -26.41)
>DroSim_CAF1 69821 110 + 1
GUCGGG-------CUCCCAUUCCACAUCACCAUUACCAUUACCUUAUGCCCAUUCCCCAUUCCUUGGGC-CAUCGUUCCUCGGAAUGGCUAAAAUUAACUCGCCAUCAAUCGGCGGGU
...(((-------(.................................)))).....(((((((..(((.-......)))..))))))).........(((((((.......))))))) ( -28.91)
>DroEre_CAF1 68391 109 + 1
GUCGGG-------UUCCCAUUCCACAUCACCAUUACCAUUACCUUAUGCCCAUUCCCCAUUCCUUGGUC-CAUCGUUCCUCGGAAUGGCUAAAAUUAACUUGC-AUUAAUGGGCGGCU
(((((.-------...)).............................(((((((...((((((..((..-.......))..))))))((............))-...)))))))))). ( -25.90)
>DroYak_CAF1 68510 109 + 1
GCGGGGGGAUCCAUUCCCGUUCCACAUCAACAUUACCAUUACCUUAUGCCCA-------UUCCUUGGUC-CAUCGUUCCUCGGAAUGGCUAAAAUUAGCUUGC-AUUAAUGGGCGGGU
(((((((((.....))))..)))............((((((....((((.((-------((((..((..-.......))..))))))((((....))))..))-)))))))))).... ( -30.90)
>consensus
GUCGGG_______CUCCCAUUCCACAUCACCAUUACCAUUACCUUAUGCCCAUUCCCCAUUCCUUGGGC_CAUCGUUCCUCGGAAUGGCUAAAAUUAACUCGCCAUCAAUGGGCGGGU
................(((((((........................(((((............))))).....(.....)))))))).........(((((((.......))))))) (-18.18 = -18.82 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:44 2006