Locus 6778

Sequence ID	2L_DroMel_CAF1
Location	18,943,512 – 18,943,604
Length	92
Max. P	0.600120

overview

Window 1

Location	18,943,512 – 18,943,604
Length	92
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	89.05
Mean single sequence MFE	-32.80
Consensus MFE	-24.32
Energy contribution	-24.56
Covariance contribution	0.24
Combinations/Pair	1.05
Mean z-score	-1.67
Structure conservation index	0.74
SVM decision value	0.13
SVM RNA-class probability	0.600120
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18943512 92 + 22407834
AAGCGCGAGCGAGAGGGCCAGAUACCAGAGUGCUGGGUGUUGCAUCGCCUGGCGAAGGGCUCGCAAGGAGCACGCAAGUGCGAGCGGGACGA
..((((((((....((........))....(((..((((......))))..)))....)))))).....((((....))))..))....... ( -39.40)
>DroSec_CAF1 69166 92 + 1
AAGCGCGAGCGAGAGGGCCAGAUACCAGAGUGCUGGGUGUUGCAUCGCAUGGCGAAGGGCUCGCAAGGAGCACGCGAGUGCGAGCGGGACGA
..((....)).......((((.(((....)))))))((.((((.((((((.(((....((((.....)))).)))..)))))))))).)).. ( -36.20)
>DroSim_CAF1 69417 92 + 1
AAGCGCGAGCGAGAGGGCCAGAUACCACAGUGCUGGGUGUUGCAUCGCAUGGCGAAGGGCUCGCAAGGAGCACGCGAGUGCGAGCGGGACGA
..((....)).......((((.(((....)))))))((.((((.((((((.(((....((((.....)))).)))..)))))))))).)).. ( -36.20)
>DroEre_CAF1 67994 85 + 1
AAGCAAGAGCGAGAGGGCAA-------GAGUGCUGGGUGCUGCAUCGCAUGGCGAAGGGCUCGCAAGGAGCACGCGAGUGCGAGCGAGAUGA
.((((....(....)((((.-------...))))...))))((.((((((.(((....((((.....)))).)))..))))))))....... ( -28.00)
>DroYak_CAF1 68112 85 + 1
AAGCAAGAGCGAGAGGGCCA-------GAGUGCUGGGUGUUGCAUUUCAUGGCGAAGGGCACGCAAGGAGUACGCGAGUGCGAGCGGGAUGA
..((....(((.((.(.(((-------(....)))).).))((.((((.....)))).)).))).....((((....))))..))....... ( -24.20)
>consensus
AAGCGCGAGCGAGAGGGCCAGAUACCAGAGUGCUGGGUGUUGCAUCGCAUGGCGAAGGGCUCGCAAGGAGCACGCGAGUGCGAGCGGGACGA
..((....(((((...((((.........((((........))))....))))......))))).....((((....))))..))....... (-24.32 = -24.56 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:43 2006