Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,940,929 – 18,941,035 |
Length | 106 |
Max. P | 0.639259 |
Location | 18,940,929 – 18,941,035 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.34 |
Mean single sequence MFE | -22.56 |
Consensus MFE | -12.20 |
Energy contribution | -13.02 |
Covariance contribution | 0.82 |
Combinations/Pair | 1.12 |
Mean z-score | -1.97 |
Structure conservation index | 0.54 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.639259 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18940929 106 - 22407834 GAAGGGAAAACCGCAGAGUGAACUCAAAUAU----GUAUUCUGCUCCGGAAACGCCGAGUCUAACUCUAUCCACCACUC------AAUUCGCGGAAUGAUUUCCCCAAAACCACCA---- ...((((((......(((....)))......----.((((((((..((....))..(((.....)))............------.....)))))))).))))))...........---- ( -26.90) >DroSec_CAF1 65861 106 - 1 GAAGGGGAAACCGCAGAGUGAACUCAAAUAU----GUAUUCUGCUCCGGAAAUGCCGAGUCUAACUCUAUCCACCACUC------AAUUCGCGGAAUGAUUUCCCCAAAACCACCA---- ...(((((((.....(((....)))......----.((((((((...((.....))(((.....)))............------.....)))))))).)))))))..........---- ( -28.90) >DroSim_CAF1 66100 106 - 1 GAAGGAGAAACAGCAGAGUGAACUCAAAUAU----GUAUUCCGCUCCGGAAAUGCCGAGUCUAACUCUAUCCACCACUC------AAUUCGCGGAAUGAUUUCCCCAAAACCACCA---- ...((.((((.....(((....)))......----.((((((((...((.....))(((.....)))............------.....)))))))).)))).))..........---- ( -24.20) >DroEre_CAF1 65790 110 - 1 -AAAGCGAAAAAUCCGAGUGAGCUCAAAUAUGAAUGCAGUCUGCUC---------CGAGUCUAACUCUAUCCACCACUCAAUCUCAAUUCGCGGAAUGUUUUCCCCAAAACCACCACUAU -...(((((......((((..(((((........)).)))..))))---------.(((.....)))....................)))))((((....))))................ ( -19.80) >DroYak_CAF1 65899 95 - 1 --------AACCUCAGAGUGAGCUCUAAUAU----GUAGUCUGCUC---------CGAGUCUAACUCUAUCCACCACUCAAUCUCAAUUCGCUGAAUGAUUUCCCCAAAACCACCA---- --------....(((((((((((.(((....----.)))...))))---------.(((.....)))........))))....(((......))).))).................---- ( -13.00) >consensus GAAGGGGAAACCGCAGAGUGAACUCAAAUAU____GUAUUCUGCUCCGGAAA_GCCGAGUCUAACUCUAUCCACCACUC______AAUUCGCGGAAUGAUUUCCCCAAAACCACCA____ ...............(((....)))...........((((((((...((.....))(((.....))).......................))))))))...................... (-12.20 = -13.02 + 0.82)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:41 2006