Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,939,627 – 18,939,718 |
Length | 91 |
Max. P | 0.623200 |
Location | 18,939,627 – 18,939,718 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 86.81 |
Mean single sequence MFE | -20.58 |
Consensus MFE | -15.82 |
Energy contribution | -15.70 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.10 |
Mean z-score | -1.61 |
Structure conservation index | 0.77 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.623200 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18939627 91 - 22407834 ACGCCUUUGGAAAAUGCUACCAAGUCCACUGGCGUUGCAAAAUUCUGCGAUAAAAACAACAAAGAAGCGACGUCUGAAAUAGGAGCAACAA ..(((..((((...((....))..))))..)))(((((....((((................))))......(((......)))))))).. ( -18.89) >DroSec_CAF1 64540 91 - 1 ACACCUUUGGAAAAUGCUACCAAUUCCACUGGCGUUGCAAAAUUCUGCGGUAAAAACAACAAAGAAGCGACGUCUGAAAUAGGAGCAACAA ..............((((.((.(((.((..((((((((....((((...((.......))..)))))))))))))).))).)))))).... ( -20.70) >DroSim_CAF1 64778 91 - 1 ACACCUUUGGAAAAUGCUACCAAUUCCACUGGCGUUGCAAAAUUCUGCGGUAAAAACAACAAAGAAGCGACGUCUGAAAUAGGAGCAACAA ..............((((.((.(((.((..((((((((....((((...((.......))..)))))))))))))).))).)))))).... ( -20.70) >DroEre_CAF1 63390 85 - 1 ACGACGUCGGAAAAUGCUGC------CACUGGCGUUGCGAAAUUCUGCGACAAGAACAACAAAGAAGCGACGCCUAAAAUAAGAGCUGCGA ....((.(((......((..------....((((((((....((((......))))(......)..)))))))).......))..))))). ( -19.02) >DroYak_CAF1 63698 91 - 1 ACGCCGUCGAAAAAUGCUGCCCAGUCCACUGGCGCUGCCAAAUUCUGCGACAAAAACAACAAAGAAGCGACGCCUGAAAUAGGAGCAGCGA .(((.((((...(((((.((((((....)))).)).))...)))...))))...............((....((((...)))).)).))). ( -23.60) >consensus ACGCCUUUGGAAAAUGCUACCAAGUCCACUGGCGUUGCAAAAUUCUGCGAUAAAAACAACAAAGAAGCGACGUCUGAAAUAGGAGCAACAA ......(((.....((((.((.........((((((((....((((................)))))))))))).......)))))).))) (-15.82 = -15.70 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:40 2006