Locus 6774

Sequence ID 2L_DroMel_CAF1
Location 18,929,478 – 18,929,579
Length 101
Max. P 0.732189
window10817

overview

Window 7

Location 18,929,478 – 18,929,579
Length 101
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 78.73
Mean single sequence MFE -28.07
Consensus MFE -18.36
Energy contribution -18.92
Covariance contribution 0.56
Combinations/Pair 1.08
Mean z-score -1.50
Structure conservation index 0.65
SVM decision value 0.43
SVM RNA-class probability 0.732189
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18929478 101 + 22407834
CAAGGCCUGC----CGGCCAUAACUCCAAAUUGGCCAUUCGAUCUGGUUACUUAAAGGGUAAUUAAAUUAACUGCCGCACAGCAGUC-----GAGUAGUUG------AGCCAGCAA-
...((((.((----.(((((...........)))))((((((..((((((((.....))))))))......((((......))))))-----)))).)).)------.))).....- ( -29.00)
>DroPse_CAF1 56197 116 + 1
CAAAGUCUUCUACUUGGCCAUAACUCCAAAUUGGCCAUUCGAUAUGGUUACUUAAAGGGUAAUUAAAUUAACUGCCGCACAGCAGUGGCCCAGAGUACGAAAACACAGG-CAGUAAA
....((.((((((((((((...((((..((.(((((((.....))))))).))...))))..........(((((......)))))))))..))))).))).)).....-....... ( -28.80)
>DroEre_CAF1 53413 100 + 1
CAAGGCCUGC----UGGCCAUAACUCCAAAUUGGCCAUUCGAUCUGGUUACUUAAAAGGUAAUUAAAUUAACUGCCGCACAGCAGUC-----GAGUAGUUG------AG-CAGCGA-
....((.(((----((((((...........)))))((((((..((((((((.....))))))))......((((......))))))-----)))).....------))-))))..- ( -29.80)
>DroYak_CAF1 53804 100 + 1
CAAGGCCUGC----UGGCCGAAUCUCCAAAUUGGCCAUUCGAUCUGGUUACUUAAAGGGUAAUUAAAUUAUCUGCCGCACAGCAGUC-----GUGUAGUUG------AG-CAACGA-
......((((----(((((((((..((.....))..)))))...((((((((.....))))))))...........)).))))))((-----((((.....------.)-).))))- ( -25.30)
>DroAna_CAF1 37238 99 + 1
CCAAGUAUGU----CGGCCAUAACUCCAAAUUGGCCAUUCGAUCUGGUUACUUAAAGGGUAAUUAAAUUAAAUGUCGCACAGCAGCUCCCAGGAGCAGUGG------CG--------
..........----.(((((...........)))))(((..((.((((((((.....)))))))).))..)))..(((...((.((((....)))).)).)------))-------- ( -26.70)
>DroPer_CAF1 58296 116 + 1
CAAAGUCUUCUACUUGGCCAUAACUCCAAAUUGGCCAUUCGAUAUGGUUACUUAAAGGGUAAUUAAAUUAACUGCCGCACAGCAGUGGCCCAGAGUACGAAAACACAGG-CAGUAAA
....((.((((((((((((...((((..((.(((((((.....))))))).))...))))..........(((((......)))))))))..))))).))).)).....-....... ( -28.80)
>consensus
CAAAGCCUGC____UGGCCAUAACUCCAAAUUGGCCAUUCGAUCUGGUUACUUAAAGGGUAAUUAAAUUAACUGCCGCACAGCAGUC_____GAGUAGUUG______AG_CAGCAA_
...............(((((...........)))))(((((((.((((((((.....)))))))).))).(((((......)))))......))))..................... (-18.36 = -18.92 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:39 2006