Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,929,339 – 18,929,431 |
Length | 92 |
Max. P | 0.883098 |
Location | 18,929,339 – 18,929,431 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 74.10 |
Mean single sequence MFE | -20.95 |
Consensus MFE | -15.40 |
Energy contribution | -16.15 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.59 |
Structure conservation index | 0.74 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.883098 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18929339 92 - 22407834 GUGUGCCACUUUUUGUGGCAUGCAGUUUUCAGUUGACAUUGUUACGGACUUCACUGAGCAAAUAAAAAAAAUGUAUUCAAAUUCGCAUUUCA-------------- (((((((((.....))))))))).(((.......))).(((((.(((......)))))))).......((((((..........))))))..-------------- ( -20.80) >DroSec_CAF1 54457 81 - 1 GUGUGCCACUUUUUGUGGCAUGCAGUUUUCAGUUGACAUUGUUACGGAAUUAACUGAGCAAAAAAGA-----------AAAUUCGCAUUUUA-------------- (((((((((.....)))))))))(((((((.(....).(((((.(((......))))))))....))-----------))))).........-------------- ( -21.80) >DroSim_CAF1 54679 80 - 1 GUGUGCCACUUUUUGUGGCAUGCAGUUUUCAGUUGACAUUGUUACGGAAUUUACUGAGCAAA-AAUA-----------AAAUUCGCAUUUCA-------------- (((((((((.....))))))))).(((.......))).(((((.(((......)))))))).-....-----------..............-------------- ( -19.60) >DroEre_CAF1 53252 100 - 1 GUGUGCAAGUUUUUGUGGCAUGCAGCUUUCAGUUGACAUUGUUACGGACUUUACUGAGCUAAA----AAAAUGGAUUCCAAUGCGG--UGGAACAUAUGAACAUAU ((((((.(((.(((((((((((((((.....)))).)).)))))))))....)))..))....----...(((..(((((......--)))))..)))..)))).. ( -21.60) >consensus GUGUGCCACUUUUUGUGGCAUGCAGUUUUCAGUUGACAUUGUUACGGAAUUUACUGAGCAAAAAA_A___________AAAUUCGCAUUUCA______________ (((((((((.....)))))))))...............(((((.(((......))))))))............................................. (-15.40 = -16.15 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:38 2006