Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,919,642 – 18,919,739 |
Length | 97 |
Max. P | 0.814365 |
Location | 18,919,642 – 18,919,739 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.71 |
Mean single sequence MFE | -22.35 |
Consensus MFE | -14.94 |
Energy contribution | -16.30 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.05 |
Mean z-score | -1.94 |
Structure conservation index | 0.67 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.814365 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18919642 97 + 22407834 -------ACAAAAGCUGCUAAAUGGAUGCAAUGUCACAAUUUCCCGGGAUCUCACACACUCUUCGC----------------AAAUGCCGCUCGUAUUUGCUUACGAACAUUUAGCAGUA -------......(((((((((((..((...(((.......((....))......)))......((----------------((((((.....))))))))...))..))))))))))). ( -25.62) >DroSec_CAF1 44730 96 + 1 -------ACGAAAGCUGCUAAAUGGAUGCAAUGUCACAAU-UCCCGGGAACUCACACACUCCUCGC----------------AAAUGCCGCUCGUAUUUGCUUACGAACAUAUAGCAGUA -------......(((((((.((((((.....))).....-...(((((..........)))..((----------------((((((.....))))))))...))..))).))))))). ( -23.90) >DroSim_CAF1 44810 96 + 1 -------ACGAAAGCUGCUAAAUGGAUGCAAUGUCACAAU-UCCCGGGAACUCACACACUCCUCGC----------------AAAUGCCGCUCGUAUUUGCUUACGAACAUUUAGCAGUA -------......((((((((((((((.....))).....-...(((((..........)))..((----------------((((((.....))))))))...))..))))))))))). ( -27.40) >DroEre_CAF1 43337 96 + 1 -------ACAAAAGCUUCUAAAUGGAUGCAAUGUCACAAU-UCCCGGGAUCUCACACACUCCUCGC----------------AAAUGCCACUCGUAUUUGCUUACGAACAUUUAUCAGUA -------......(((..(((((((((.....))).....-...(((((..........)))..((----------------((((((.....))))))))...))..))))))..))). ( -17.10) >DroYak_CAF1 43802 112 + 1 -------ACGAAAGCUGCUAAAUGGAUGCAAUGUCACAAU-UCCCGGGAUCUCACACACUCCUCGCAAAUUCACAAAUUCGCAAAUGCCACUCGUAUUUGCUUACGAACAUUUAGCAGUA -------......(((((((((((..((...(((...(((-(..(((((..........))).))..)))).))).....((((((((.....))))))))...))..))))))))))). ( -29.00) >DroAna_CAF1 28411 89 + 1 GAAAGACGGGAAAGCCGCUCAAUGCAUGCAAUGUCACAAC-UC----------A---GCUCUGCG-----------------AAAUUCCACUCCUAUUUGCUUACAAACAUUUAGCAUCA ((......((((....((.....)).((((..((......-..----------.---))..))))-----------------...)))).........((((...........)))))). ( -11.10) >consensus _______ACGAAAGCUGCUAAAUGGAUGCAAUGUCACAAU_UCCCGGGAUCUCACACACUCCUCGC________________AAAUGCCACUCGUAUUUGCUUACGAACAUUUAGCAGUA .............((((((((((((((.....)))........................................................(((((......))))).))))))))))). (-14.94 = -16.30 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:34 2006