Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,919,051 – 18,919,145 |
Length | 94 |
Max. P | 0.605727 |
Location | 18,919,051 – 18,919,145 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 94.13 |
Mean single sequence MFE | -13.08 |
Consensus MFE | -12.62 |
Energy contribution | -11.82 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.33 |
Mean z-score | -0.80 |
Structure conservation index | 0.97 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.605727 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18919051 94 - 22407834 AUAGUAUAGCCGAAAAAUCCAUUUUGACCCCUUUUGACACAGCCAGAAGUCCUGUUCGCAAAUAAAAGCGUCCAUUACUCAAACGCUAACACAC ...((.(((((((((......)))))....((((((.......))))))...((..(((........)))..))..........)))))).... ( -13.10) >DroSec_CAF1 44144 90 - 1 AU---AUAGCCGAA-AAUCCAUUUUGACCCCUUUUGACGCAGCCAGAAGUCCUGUUCGCAAAUAAAAGCGUCCAUUACUCAAACGCUAACACAC ..---.((((((((-(.....)))))....((((((.......))))))...((..(((........)))..))..........))))...... ( -12.30) >DroSim_CAF1 44223 91 - 1 AU---AUAGCCGAAAAAUCCAUUUUGACCCCUUUUGACGCAGCCAGAAGUCCUGUUCGCAAAUAAAAGCGUCCAUUACUCAAACGCUAACACAC ..---.(((((((((......)))))....((((((.......))))))...((..(((........)))..))..........))))...... ( -12.50) >DroEre_CAF1 42763 91 - 1 AU---AUAGCCGAAAAAUCCAUUUUGACCCCUUUUGACACAGCCAGAAGUCCUGUUCGCAAAUAAAAGCGUCCAUUACUCAAACGCUAACACAC ..---.(((((((((......)))))....((((((.......))))))...((..(((........)))..))..........))))...... ( -12.50) >DroYak_CAF1 43225 91 - 1 AU---AUAGCCGAAAAAUCCAUUUUGACCCCUUUUGACACAACCAAAAGUCCUGUUCGCAAAUAAAAGCGUCCAUUACUCAAACGCUGGCACAC ..---...(((((....))...(((((...((((((.......))))))...((..(((........)))..))....)))))....))).... ( -14.00) >DroAna_CAF1 27842 91 - 1 AU---AGGGCCGAAAAAUCCAUUCUGACCCCUUUUGACACAGCCAGAAGUCCUGUUCGUAAAUAAAAGCGUCCAUUACUCAAACGCUCCCAAAC ..---.(((.((((.......(((((.................)))))......))))........(((((...........)))))))).... ( -14.05) >consensus AU___AUAGCCGAAAAAUCCAUUUUGACCCCUUUUGACACAGCCAGAAGUCCUGUUCGCAAAUAAAAGCGUCCAUUACUCAAACGCUAACACAC ......((((....................((((((.......))))))...((..(((........)))..))..........))))...... (-12.62 = -11.82 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:31 2006