Locus 6760

Sequence ID 2L_DroMel_CAF1
Location 18,897,468 – 18,897,577
Length 109
Max. P 0.943709
window10795

overview

Window 5

Location 18,897,468 – 18,897,577
Length 109
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 92.29
Mean single sequence MFE -31.90
Consensus MFE -28.44
Energy contribution -28.68
Covariance contribution 0.24
Combinations/Pair 1.12
Mean z-score -1.56
Structure conservation index 0.89
SVM decision value 1.34
SVM RNA-class probability 0.943709
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18897468 109 - 22407834
CGAUUUGGGUCGAAUCGCAGGUUUAUGCGUUUUGAUUAGCAUAAAUCAAAGUUAGUCGGAGGUAGCCAUGACUUAGGCACGUCUCCAUCGGUCGAAAAUCACCGCAUCU
.(((((.(..(((......(((((((((..........)))))))))..........(((((..(((........)))...))))).)))..)..)))))......... ( -31.70)
>DroSec_CAF1 22746 109 - 1
CGAUUUGGGUCGAAUCGCAGGUUUAUGCGUUUUGAUUAGCAUAAAUCAAAGUUAGUCGGAGGUAGCCAUGACUUAGGCACGUCUCCAUCGGUCCAAGAUCCCCGCAUCU
.(((((((..(((......(((((((((..........)))))))))..........(((((..(((........)))...))))).)))..)).)))))......... ( -34.10)
>DroSim_CAF1 20954 109 - 1
CGAUUUGGGUCGAACCGCAGUUUUAUGCGUUUUGAUUAGCAUAAAUCAAAGUUAGUCGGAGGUAGCCAUGACUUAGGCACGUCUCCAUCGGUCCGAAAUCCCCGCAUCU
.(((((((..(((..((((......))))....(((((((..........)))))))(((((..(((........)))...))))).)))..)).)))))......... ( -33.40)
>DroEre_CAF1 20486 105 - 1
CGAUUUGGAUCGAAUCGCAGGUUUAUGCGUUUUGAUUAGCAUAAAUCAAAGUAAAUCGAAGGUAGCCAUGACUUAGGCACAUUUCCAACGGCCCAAAAUGACCGC----
((.(((((..((.......(((((((((..........)))))))))..........((((((.(((........))))).))))...))..))))).)).....---- ( -25.60)
>DroYak_CAF1 21280 109 - 1
CGAUUUGGGUCGAAUCGCAGGUUUAUGCGUUUUGAUUAGCAUAAAUCAAAGUUAGUCGGAGGUAGCCAUGACUUAGGCUCGUUUCCAUCGGUCCAAAAUCACCGCAUCU
.(((((((..(((......(((((((((..........)))))))))..........(((..(((((........)))).)..))).)))..)).)))))......... ( -34.70)
>consensus
CGAUUUGGGUCGAAUCGCAGGUUUAUGCGUUUUGAUUAGCAUAAAUCAAAGUUAGUCGGAGGUAGCCAUGACUUAGGCACGUCUCCAUCGGUCCAAAAUCACCGCAUCU
...(((((..(((......(((((((((..........)))))))))..........(((((..(((........)))...))))).)))..)))))............ (-28.44 = -28.68 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:19 2006