Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,896,850 – 18,896,941 |
Length | 91 |
Max. P | 0.746845 |
Location | 18,896,850 – 18,896,941 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 79.25 |
Mean single sequence MFE | -18.25 |
Consensus MFE | -10.84 |
Energy contribution | -11.28 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.14 |
Mean z-score | -1.84 |
Structure conservation index | 0.59 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.746845 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18896850 91 - 22407834 --------GAAUGCGCAUGCGAGUGUACCAUAAAAUUCGUUAAGUAUUCGCCGCGACAGACAAGAGACAAUCGUAAAAACAAAAACCCAAA--------AACACAAA --------((((((....((((((..........))))))...))))))...((((..(........)..)))).................--------........ ( -13.70) >DroPse_CAF1 18772 96 - 1 -AUUUGGAGAAUGCGCAUGCGAGUGUACAAUAAAAUUUGUUAAAUAUUCGCUUGGA--GCGCGGAGACAAUCGUAAACAAAAAUAUACAAA--------AAAUCAAC -.((((......((((..((((((((((((......))))...)))))))).....--))))(....).........))))..........--------........ ( -20.70) >DroSec_CAF1 22110 106 - 1 -UUUUGGAGAAUGCGCAUGCGAGUGUACCAUAAAAUUCGUUAAGUAUUCGCCGCUACAGACAAGAGACAAUCGUAAAAACAAAAACCCAAAAAAAAAAAAACACAAA -((((((.((((((....((((((..........))))))...))))))..............((.....))..............))))))............... ( -17.40) >DroSim_CAF1 20326 101 - 1 UUUUUGGAGAAUGCGCAUGCGAGUGUACCAUAAAAUUCGUUAAGUAUUCGCCGCGACAGACAAGAGACAAUCGUAAAAACAAAAACCCAAAA------AAACACAAA (((((((.((((((....((((((..........))))))...))))))...((((..(........)..))))............))))))------)........ ( -20.00) >DroEre_CAF1 19911 88 - 1 -UUUUGGAGAAUGCGCAUGCGAGUGUACCAUAAAAGUCGUUAAGUAUUCGCCGCGACAGACAAGAGACAAUCGUAAAA-C-----------------AAAACACAAA -....((.((((((....((((.(..........).))))...)))))).))((((..(........)..))))....-.-----------------.......... ( -15.50) >DroPer_CAF1 20632 96 - 1 -AUUUGGAGAAUGCGCAUGCGAGUGUACAAUAAAAUUUGUUAAAUAUUCGCUUGGA--GCGCGGAGACAAUCGUAAACAAAAAUAUACAAA--------AACUCAAC -.....(((...((((..((((((((((((......))))...)))))))).....--))))(....).......................--------..)))... ( -22.20) >consensus _UUUUGGAGAAUGCGCAUGCGAGUGUACCAUAAAAUUCGUUAAGUAUUCGCCGCGACAGACAAGAGACAAUCGUAAAAACAAAAACCCAAA________AACACAAA .....((.((((((....((((((..........))))))...)))))).))....................................................... (-10.84 = -11.28 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:18 2006