| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,890,454 – 18,890,564 |
| Length | 110 |
| Max. P | 0.711709 |
| Location | 18,890,454 – 18,890,564 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 78.80 |
| Mean single sequence MFE | -23.04 |
| Consensus MFE | -9.36 |
| Energy contribution | -9.88 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.711709 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18890454 110 - 22407834 AAACUGAGAAGGGCCAAAGCUACCGCUCAAAAAUCAAACUGAUGGGUAUUUGGUGUAACAUUAAAUACUUU----CAGUGGUUGCUUAAAUACAAAAUGAAACUUAAAAUGUAA .(((((((...(((....)))....))).........(((((.((((((((((((...)))))))))))))----))))))))............................... ( -21.80) >DroSec_CAF1 15851 98 - 1 GAACUGAGAAGGGCCAAAGCUACAGUCCAAAAAUCAAACUGAUUGGUAUUUGGUGUAACAUUAAAUACUUU----CAAUGGAUGCUUAAA------------CUUAAAAUGAAA ....((((...(((....)))...(((((..((((.....))))(((((((((((...)))))))))))..----...))))).......------------))))........ ( -17.70) >DroSim_CAF1 14133 98 - 1 GAACUGAGAAGGGCCAAAGCUGCCGCCCAAAAAUCCAACUGAUGGGUAUUUGGUGUAACAUUAAAUACUUC----CAAUGGUUGCUUAAA------------CUUAAAAUGAAA ....((((..((((..........)))).......((((((.(((((((((((((...))))))))))..)----)).))))))......------------))))........ ( -22.40) >DroEre_CAF1 13639 110 - 1 GAAUUGAAAGGGGCCAUGGCUGCCUGCCAAAAAUCAAACUGAAGAGUAUUUGCUGUAACAUUAAAUACCUC----CAAUGGCUUCUUAAAUACAAAAUGAAACUUAAACUGAAA .......(((((((((((((.....)))...........((.((.(((((((.((...)).))))))))).----))))))))))))........................... ( -23.30) >DroYak_CAF1 13919 113 - 1 GAAUUGGGAGGGGGCAA-GCUACCUCCCAAAAAUCAAUCUGAGGAGUAUUUGGUUUAACAUUAAAUACCUACAUACAAUGGCUUCUUAAAUACCAAAUGGAACUUAAAUUGAAA ...((((((((..(...-.)..))))))))...(((((.((((...((((((((.............((..........))..........))))))))...)))).))))).. ( -30.00) >consensus GAACUGAGAAGGGCCAAAGCUACCGCCCAAAAAUCAAACUGAUGGGUAUUUGGUGUAACAUUAAAUACUUC____CAAUGGCUGCUUAAAUAC_AAAUG_AACUUAAAAUGAAA ..((((....((((..........)))).................((((((((((...)))))))))).......))))................................... ( -9.36 = -9.88 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:16 2006