Locus 6754

Sequence ID 2L_DroMel_CAF1
Location 18,871,295 – 18,871,404
Length 109
Max. P 0.858710
window10784

overview

Window 4

Location 18,871,295 – 18,871,404
Length 109
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 83.29
Mean single sequence MFE -31.00
Consensus MFE -23.62
Energy contribution -24.62
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.97
Structure conservation index 0.76
SVM decision value 0.82
SVM RNA-class probability 0.858710
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18871295 109 - 22407834
AACCCAAAACCCCGGUCUCGAAAGGCGAGACCAAUUUCGAUUGUCGCGCCACGGGGCGACUCAUUCAGCGACUCGUUCGG---UUCGGUUAUU--AUAUAUAUAUACCAUAUAU
((((...((((..(((((((.....))))))).....(((..((((((((....)))((.....)).))))))))...))---)).))))...--..((((((.....)))))) ( -32.30)
>DroSec_CAF1 11164 95 - 1
AACCCAAAACCCCGGUCUCGAAAGGCGAGACCAAUUUCGAUUGUCGCGCCACGGGGCGACUCAUUCA------------G---UUCGGUUAUU--AUAUCU--GCCCAAUAUAU
.......((((..(((((((.....)))))))......((..(((((.(....).)))))....)).------------.---...))))...--......--........... ( -27.40)
>DroSim_CAF1 11170 95 - 1
AACCCAAAACCCCGGUCUCGAAAGGCGAGACCAAUUUCGAUUGUCGCGCCACGGGGCGACUCAUUCA------------G---UUCGGUUAUU--AUAUAU--GUCCAAUAUAU
.......((((..(((((((.....)))))))......((..(((((.(....).)))))....)).------------.---...))))...--((((((--.....)))))) ( -28.80)
>DroEre_CAF1 10204 102 - 1
AACCCAAAACCUCGGCCUCGAGAGGCGAGACCAAUUUCGAUUGUCGCGCCACGGGGCGACUCAUUCAGCGACUCGUUGGGUUAUU----------AUAUAU--GUCCCAUAUAU
(((((((....(((((((((...((((.(((.(((....)))))).)))).))))))((.....))..)))....)))))))...----------((((((--(...))))))) ( -33.70)
>DroYak_CAF1 11356 112 - 1
AACCCAAAACCCCGGUCUCGAGAGGCGAGACCAAUUUGGAUUGUCGCGCCACGGGGCGACUCAUUCAGCGACUCGUUCGGCUAUUCGGUUAUUAAAUAUAU--GUCCGAUAUAU
...........(((((((((.....))))))).....((((.((((((((....)))((.....)).)))))..))))))....((((.(((.......))--).))))..... ( -32.80)
>consensus
AACCCAAAACCCCGGUCUCGAAAGGCGAGACCAAUUUCGAUUGUCGCGCCACGGGGCGACUCAUUCAGCGACUCGUU_GG___UUCGGUUAUU__AUAUAU__GUCCAAUAUAU
.......((((..(((((((.....)))))))......((..(((((.(....).)))))....))....................))))........................ (-23.62 = -24.62 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:10 2006