Locus 6753

Sequence ID 2L_DroMel_CAF1
Location 18,863,254 – 18,863,344
Length 90
Max. P 0.543671
window10783

overview

Window 3

Location 18,863,254 – 18,863,344
Length 90
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 83.08
Mean single sequence MFE -23.85
Consensus MFE -14.78
Energy contribution -15.95
Covariance contribution 1.17
Combinations/Pair 1.24
Mean z-score -2.15
Structure conservation index 0.62
SVM decision value 0.02
SVM RNA-class probability 0.543671
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18863254 90 + 22407834
CCGU--ACAUUUUUGAGGGUAUUUAAGAGAUACUUUAAGUAUCUGGCA-AGGAAAGCCAUCGUACUUGGCUUGUAUUUGUUGCUCUUCAAGCU
....--.....((((((((((......((((((.....)))))).(((-((..((((((.......))))))...)))))))).))))))).. ( -25.00)
>DroSec_CAF1 3167 90 + 1
CCGU--ACAUUUUUGAGGGUAUUUAAGAGAUACUUUAAGUAUCUGGCA-AGAAAAGCCAUCGUACUUGGCUUGUAUUUGUUGCUCUUCCAGCU
..((--((.((((((.(((((((((((......)))))))))))..))-))))((((((.......))))))))))..((((......)))). ( -23.40)
>DroSim_CAF1 3158 90 + 1
CCGU--ACAUUUUUGAGGGUAUUUAAGAGAUACUUAAAGUAUCUGGCA-AGGAAAGCCAUCGUACUUGGCUUGUAUUUGUUGCUCUUCAAGCU
....--.....((((((((((......((((((.....)))))).(((-((..((((((.......))))))...)))))))).))))))).. ( -25.00)
>DroEre_CAF1 2995 90 + 1
CCGU--ACAUUUUUGAGGGUAUUUAAAGGGUGCUUUAAGUAUCUGGCA-ACGAAAGCCAUCCUACUUGGCUUGUAUUUGUUGCUCUUCAAGCU
....--.....(((((((((((((((((....))))))))))))((((-((((((((((.......)))))....)))))))))..))))).. ( -28.40)
>DroYak_CAF1 3196 85 + 1
GCGC--ACAUUUUUGAGGGUAUUUAAAAGGUGCUUUAAGUAUCUUGCA------AGCCAUCGUACUUGGCUUGUAUUUGUUGCUCUUCAAGCU
((((--((.((((((((....))))))))))))....((((.(.((((------(((((.......)))))))))...).))))......)). ( -26.00)
>DroPer_CAF1 3075 87 + 1
CGUUUAGCAAUUUUUAGGGUAUUUUUAAGCUGCUUCAAA--GCCAAAAAGGAAAAGCCUUAGUACUUG----GUAUUUGUUGCUUUUCAAGCU
.((((((((((.....(((((((.....(((.......)--))....((((.....))))))))))).----......))))))....)))). ( -15.30)
>consensus
CCGU__ACAUUUUUGAGGGUAUUUAAAAGAUACUUUAAGUAUCUGGCA_AGGAAAGCCAUCGUACUUGGCUUGUAUUUGUUGCUCUUCAAGCU
...........((((((((((......((((((.....)))))).(((.....((((((.......)))))).....)))))).))))))).. (-14.78 = -15.95 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:09 2006