Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,850,230 – 18,850,338 |
Length | 108 |
Max. P | 0.909838 |
Location | 18,850,230 – 18,850,338 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 81.92 |
Mean single sequence MFE | -27.15 |
Consensus MFE | -21.71 |
Energy contribution | -21.90 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.05 |
Mean z-score | -2.37 |
Structure conservation index | 0.80 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.909838 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18850230 108 + 22407834 -CAUUUGCAGCCAAACGACCCAAUGAGCUCAACAAUCAGCGUCCAGCAUUGGGUCACAC------ACAAACCGCACGGUCGAAACCCAAUCAGCGCUAUCGAGAGGGCUACCACU -.......((((....(((((((((.(((........)))......)))))))))....------......(((..(((....)))......)))..........))))...... ( -25.60) >DroVir_CAF1 1876 100 + 1 ------CUAGCCAAACGACCCAAUGAGCUUAA---CCAGCGUCCCACAUUGGGUCACAC------ACAAACCGCACGCAUUAAACCCAAUCAGCGUUAUCGCGAGGGCUAUCACU ------.(((((....(((((((((.(((...---..)))......)))))))))....------......(((((((..............))))....)))..)))))..... ( -28.94) >DroGri_CAF1 2023 102 + 1 -CG---ACAGCCAAACGACCCAAUGAGCUUAA---CCAGCGUCCAACAUUGGGUCACAC------ACAAACCGCACGCAUCAAACCCAAUCAGCGUUAUCGCGAGGGCUAUCAUU -.(---(.((((....(((((((((.(((...---..)))......)))))))))....------......(((((((..............))))....)))..)))).))... ( -30.14) >DroWil_CAF1 1788 108 + 1 -CACUUACAGCCAAACGACCCAAUGAGCUCAACAGUCAG------GCAUUGGGUCACAAUACACAACAAACCGCACGCAUUAAACCCAAUCAACGCUAUCGAGAGGGCUACCACU -.......((((....(((((((((.(((....)))...------.)))))))))............................................(....)))))...... ( -22.00) >DroMoj_CAF1 1988 105 + 1 -CGAUUGCAGCCAAACGACCCAAUGAGCUUAA---UCAGCGUCCGACAUUGGGUCACAC------ACAAACCGCACGGAUAAAACCGAAUCAGCGUUAUCGCGAGGGCUAUCACU -.(((.((........(((((((((.(((...---..)))......)))))))))....------.....((.(.(((......))).....(((....)))).)))).)))... ( -29.90) >DroAna_CAF1 1177 109 + 1 UAUUUUAUAGCCAAACGACCCAAUGAGCUCAACAAUCAGCGUCCAGCGUUGGGUCACAC------ACAAACCGCACGGUCGAAACCCAAUCAGCGCUACAGAGAGGGCUACCACU .......(((((....(((((((((.(((........)))......)))))))))....------......(((..(((....)))......)))..........)))))..... ( -26.30) >consensus _CA_UUACAGCCAAACGACCCAAUGAGCUCAA___UCAGCGUCCAACAUUGGGUCACAC______ACAAACCGCACGCAUGAAACCCAAUCAGCGCUAUCGAGAGGGCUACCACU ........((((....(((((((((.(((........)))......)))))))))................(((..................)))..........))))...... (-21.71 = -21.90 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:08 2006