Locus 6750

Sequence ID 2L_DroMel_CAF1
Location 18,849,416 – 18,849,509
Length 93
Max. P 0.631508
window10779

overview

Window 9

Location 18,849,416 – 18,849,509
Length 93
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 65.79
Mean single sequence MFE -19.74
Consensus MFE -14.88
Energy contribution -14.13
Covariance contribution -0.75
Combinations/Pair 1.40
Mean z-score -0.67
Structure conservation index 0.75
SVM decision value 0.20
SVM RNA-class probability 0.631508
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18849416 93 + 22407834
CCCCUGGGCAUGAAUGCU-AACAAGAAACCUACCUCU----U----UCUAUCUACCAGUUAUCCUCGGCUGCCUGCCUGGCCUGUGAAUGCUCCGCGGGCAC
...(((((((....))).-....(((((........)----)----))).....))))........(((.....)))..(((((((.......))))))).. ( -24.40)
>DroPse_CAF1 15046 86 + 1
CACCUAUACAUAAAU--------------CCACUAU--AUAUAUAUGCAUAUCCGUAGUUAUCCUCGGCCGCCUGCCUGGCCUGCGAAUGCUCUGCGGGCAC
...............--------------.......--.......(((....((((((........(((((......))))).((....)).))))))))). ( -17.40)
>DroGri_CAF1 357 89 + 1
--UAAU---AUGAAUAUU-AAUAAACAUUCUGUC-------UCUCUUAUUGCUUGCAGUUAUCCUCGGCCGUCUGUCUGGCCUGCGAAUGCUCCGCGGGCAC
--....---.........-...............-------........(((((((..........(((((......))))).((....))...))))))). ( -18.40)
>DroSec_CAF1 15262 93 + 1
CUCCUGGGCAUAAAUGCU-AACAAGAUACCUACCUCC----U----UCUAUCAACCAGUUAUCCUCGGCCGCCUGCCUGGCCUGCGAAUGCUCCGCGGGCAC
...(((((((....))).-.....((((.........----.----..))))..))))........(((.....)))..(((((((.......))))))).. ( -23.90)
>DroWil_CAF1 346 89 + 1
CA-CU----AUCGACACU-AACAAC-----UAUAUUAUU--UAUUUGCCAUCUUUCAGUUAUCCUCGGCCGCCUGUUUGGCCUGCGAAUGCUCUGCGGGCAC
..-..----.........-......-----.........--.....(((.................))).((((((..(((........)))..)))))).. ( -15.73)
>DroYak_CAF1 11186 98 + 1
CCCCUGGCCAUAAUUUCUUUACCACAAACCCACCUUCCAUCA----ACCAUCUACCAGUUAUCCUCGGCCGCCUGUCUGGCCUGCGAAUGCUCCGCGGGCAC
.....((((.(((.....)))....................(----((.........)))......)))).........(((((((.......))))))).. ( -18.60)
>consensus
CACCUGG_CAUAAAUACU_AACAACAAACCUACCUU_____U____UCUAUCUACCAGUUAUCCUCGGCCGCCUGCCUGGCCUGCGAAUGCUCCGCGGGCAC
..................................................................(((.....)))..(((((((.......))))))).. (-14.88 = -14.13 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:05 2006