Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,974,918 – 1,975,016 |
Length | 98 |
Max. P | 0.572181 |
Location | 1,974,918 – 1,975,016 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 80.07 |
Mean single sequence MFE | -24.26 |
Consensus MFE | -15.86 |
Energy contribution | -15.75 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.28 |
Mean z-score | -1.38 |
Structure conservation index | 0.65 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.572181 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1974918 98 + 22407834 UGUACUACUUCUUCAAGUUCCAAUACUCGCAGGAUUUGGGCGGCACACCCCUGUUGGAAACGCCGCAGUUCUUGUAAGCAUAACGAGGAUAAUUAACU ....(((..(((((.(((......))).).))))..)))((((((((....))).(....)))))).((((((((.......))))))))........ ( -24.00) >DroSim_CAF1 664 97 + 1 UGUACUACUUCUUCAAGUUCCAAUACUCACAGGAUCUGGGCGGCACACCCCUGCUGGAAACGCCUCAGUUCUUGUAAGCAUA-CGAGGAUAACUAACU .........(((((.(((......))).((((((.((((((((((......))))(....)))).))).)))))).......-.)))))......... ( -25.90) >DroEre_CAF1 768 93 + 1 UCUACUACUUCUUCAAGUUCCAAUACUCCCAGGAUCUGGGCGGCACCGCUCUGCUGGAAACACCUCAGUUCUUGUAAGCAGA-CGAGCAUA----ACU ................((((.....((..(((((.(((((.((((......))))(....)..))))).)))))..))....-.))))...----... ( -21.10) >DroYak_CAF1 662 93 + 1 UCUACUACUUCUUCAAGUUCCAAUACUCCCAGGAUCUGGGCGGCACUGCCCUGCUGGAAACCCCUCAGUUCUUGUAAGCAUA-CGAGCGCA----UCU ................((((.....((..(((((.(((((.((((......))))(....)..))))).)))))..))....-.))))...----... ( -20.20) >DroAna_CAF1 924 98 + 1 UUUAUUACUUCUUCAAGUUCCAAUACUCGCAGGAUCUGGGCGGUACAGCUCUUUUAGAAACGCCACAGUUUUUGUAAGUAUAUCGAAAAGGACAAAAA ............((...(((..(((((..(((((.(((((((..................)))).))).)))))..)))))...)))...))...... ( -22.17) >DroPer_CAF1 16318 94 + 1 UUUACUUUUUCCUCAAGUUCCAAUAUUCCCAGGAGCUGGGCGGCAAUGCCCUGCUGGAGACGCCCCAGUUCCUGUAAGUAAUAGGAGAGCC----UCU .................((((..((((..((((((((((((((((......))))(....)).)))))))))))..))))...))))....----... ( -32.20) >consensus UCUACUACUUCUUCAAGUUCCAAUACUCCCAGGAUCUGGGCGGCACAGCCCUGCUGGAAACGCCUCAGUUCUUGUAAGCAUA_CGAGAAUA____ACU .........................((..(((((.((((((((((......))))(....)))).))).)))))..)).................... (-15.86 = -15.75 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:36 2006