| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,846,683 – 18,846,781 |
| Length | 98 |
| Max. P | 0.999749 |
| Location | 18,846,683 – 18,846,781 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 97.55 |
| Mean single sequence MFE | -32.74 |
| Consensus MFE | -30.38 |
| Energy contribution | -30.46 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.84 |
| Structure conservation index | 0.93 |
| SVM decision value | 4.00 |
| SVM RNA-class probability | 0.999749 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18846683 98 + 22407834 AAAAAGAGGGGCUGCAAGCGAAGAGUUUAAUGCCUCUCCAUCGAUGGGAAAAUUGGUUAAGAUAGGGCAUGUCCUCUACGAGAGAGAUGUGCCGACAA .....(((((((...((((.....))))...))))))).((((((......))))))........(((((((((((.....))).))))))))..... ( -32.50) >DroSec_CAF1 12510 98 + 1 AAAAAGAGGGGCUGCAGGCGAAGAGUUUAAUGCCUCUCCAUCGAUGGGCAAAUUGGUUAAGAUAGGGCAUGUCCUCUGCGAGAGAGAUGUGCCGACAA .....(((((((...((((.....))))...))))))).((((((......))))))........(((((((((((.....))).))))))))..... ( -32.10) >DroSim_CAF1 11203 98 + 1 AAAAAGAGGGGCUGCAGGCGAAGAGUUUAAUGCUUCUCCAUCGAUGGGCAAAUUGGUUAAGAUAGGGCAUGUCCUCUGCGAGAGAGAUGUGCCGACAA .....(((((((...((((.....))))...))))))).((((((......))))))........(((((((((((.....))).))))))))..... ( -29.30) >DroEre_CAF1 9705 98 + 1 AAAAAGAGGGGCUGCAGGCGAAGAGUUUAAUGCCUCUCCAUCGAUGGGCAAAUUGCUUAAGAUAGGGCAUGUCCUCUGCGAGAGAGAUGUGCCGACAA .....(((((((...((((.....))))...))))))).(((..(((((.....))))).)))..(((((((((((.....))).))))))))..... ( -34.90) >DroYak_CAF1 7736 98 + 1 AAAAAGAGGGGCUGCAGGCGAAGAGUUUAAUGCCUCUCCAUCGAUGGGCAAAUUGCUUAAGAUAGGGCAUGUCCUCUACGAGAGAGAUGUGCCGACAA .....(((((((...((((.....))))...))))))).(((..(((((.....))))).)))..(((((((((((.....))).))))))))..... ( -34.90) >consensus AAAAAGAGGGGCUGCAGGCGAAGAGUUUAAUGCCUCUCCAUCGAUGGGCAAAUUGGUUAAGAUAGGGCAUGUCCUCUGCGAGAGAGAUGUGCCGACAA .....(((((((...((((.....))))...))))))).((((((......))))))........(((((((((((.....))).))))))))..... (-30.38 = -30.46 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:03 2006