Locus 6747

Sequence ID 2L_DroMel_CAF1
Location 18,845,163 – 18,845,256
Length 93
Max. P 0.576513
window10775

overview

Window 5

Location 18,845,163 – 18,845,256
Length 93
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.92
Mean single sequence MFE -33.98
Consensus MFE -20.75
Energy contribution -21.11
Covariance contribution 0.36
Combinations/Pair 1.18
Mean z-score -1.70
Structure conservation index 0.61
SVM decision value 0.09
SVM RNA-class probability 0.576513
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18845163 93 - 22407834
GAUUCGUGGCGGC---AUUCAAUGCGGCUGGUAAUGCAGGGAAAACAGAGGGAAAAGCGGAA----------AACU--------------GGGACCUUUUCCUACUUAUUAUGCCGCCGC
.....((((((((---((((..((((........))))..)))...((.(((((((((((..----------..))--------------)....)))))))).)).....))))))))) ( -33.10)
>DroSec_CAF1 11014 93 - 1
GAUUCGUGGCGGC---AUUCAAUGCGGCUGGUAAUGCAGGGGAAACUGAGGGAAAAGCGGAA----------AACU--------------GGGACCUUUUCCUACUUAUUAUGCUGCCGC
.....((((((((---((((..((((........)))).((....))))(((((((((((..----------..))--------------)....)))))))).......)))))))))) ( -30.00)
>DroSim_CAF1 9660 93 - 1
GAUUCGUGGCGGC---AUUCAAUGCGGCUGGUAAUGCAGGGGAAACUGAGGGAAACGCGGAA----------AACU--------------GGGACCUUUUCCUACUUAUUAUGCCGCCGC
.....((((((((---((.....(((.(((......)))((....))........)))((((----------((..--------------......))))))........)))))))))) ( -31.80)
>DroEre_CAF1 8199 93 - 1
GAUUCGUGGCGGC---AUUCAAUGCGGCUGGAAAUGCAGAGGAAACUGAGGGAAACGCGGAA----------AACU--------------GGGACCUUUUCCUACUUAUUAUGCCGCCGC
.....((((((((---((.....(((.(((......)))((....))........)))((((----------((..--------------......))))))........)))))))))) ( -31.60)
>DroYak_CAF1 6151 93 - 1
GAUUCGUGGCGGC---AUUCAAUGCGGCUGGAAAUGCAGGGGAAACUAAGGGAAAAACGAAA----------AACU--------------GGGACCUUUUCCUACUUAUUAUGCCGCCGC
.....((((((((---((((..((((........))))..)))......(((((((......----------....--------------......)))))))........))))))))) ( -28.19)
>DroPer_CAF1 7915 120 - 1
GAUUCGUGGCGGCAACAUUCAAUGCGGCUGGUCUGGGUCGAAAGAAUGGGGGGCAUGGGGCAUGGGGCAUGGUAUUGGGGCCGAGUCUGUGAGUCUUUUGCCUACUUAUUAUGCCGCCGC
.....(((((((((.(((((....(((((......)))))...)))))(..((((..((((...((((.((((......)))).))))....))))..))))..)......))))))))) ( -49.20)
>consensus
GAUUCGUGGCGGC___AUUCAAUGCGGCUGGUAAUGCAGGGGAAACUGAGGGAAAAGCGGAA__________AACU______________GGGACCUUUUCCUACUUAUUAUGCCGCCGC
.....((((((((....(((..((((........))))..))).....(((((((.........................................))))))).........)))))))) (-20.75 = -21.11 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:02 2006