| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,843,325 – 18,843,415 |
| Length | 90 |
| Max. P | 0.999944 |
| Location | 18,843,325 – 18,843,415 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 97.33 |
| Mean single sequence MFE | -23.50 |
| Consensus MFE | -21.36 |
| Energy contribution | -21.56 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.85 |
| SVM RNA-class probability | 0.979875 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18843325 90 + 22407834 UUAAAAAUGAAACUGGUUCAAGGUCGGCGAAACGAGGUUGUUGCACCGACCGUUUACGGCCAAAAGGGAAAGGGCCACGGGAUAAUUAAA ............(((((....((((((.(.((((....)))).).))))))....))((((...........)))).))).......... ( -24.10) >DroSec_CAF1 9163 90 + 1 UUAAAAAUGAAACUGGUUCAAGGUCGGCGAAACGAGGUUGUUGCACCGACCGUUUGCGGCCAAAAGGGAACGGGCCAAGGGAUAAUUAAA .............((((((..((((((.(.((((....)))).).))))))((((.(........).))))))))))............. ( -25.70) >DroSim_CAF1 7790 90 + 1 UUAAAAAUGAAACUGGUUCAAGGUCGGCGAAACGAGGUUGUUGCACCGACCGUUUGCGGCCAAAAGGGAACGGGCCAAGGGAUAAUUAAA .............((((((..((((((.(.((((....)))).).))))))((((.(........).))))))))))............. ( -25.70) >DroEre_CAF1 6279 89 + 1 UUAAAAAUGAAACUGGUUCAAGGUCGGCGAAACGAGGUUGUUGCACCGAC-GUUUACGGCCAAAAGAGAAAGGGCCAAGGGAUAAUUAAA ...............((((((.(((((.(.((((....)))).).)))))-.))...((((...........))))...))))....... ( -19.30) >DroYak_CAF1 4180 90 + 1 UUAAAAAUGAAACUGGUUCAAGGUCGGCGAAACGAGGUUGUUGCACCGACCGUUUACGGCCAAAAGGGAAAGGGCCAAGGGAUAAUUAAA ...............((((..((((((.(.((((....)))).).))))))......((((...........))))...))))....... ( -22.70) >consensus UUAAAAAUGAAACUGGUUCAAGGUCGGCGAAACGAGGUUGUUGCACCGACCGUUUACGGCCAAAAGGGAAAGGGCCAAGGGAUAAUUAAA ...............((((..((((((.(.((((....)))).).))))))......((((...........))))...))))....... (-21.36 = -21.56 + 0.20)
| Location | 18,843,325 – 18,843,415 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 97.33 |
| Mean single sequence MFE | -22.56 |
| Consensus MFE | -22.04 |
| Energy contribution | -22.24 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.85 |
| Structure conservation index | 0.98 |
| SVM decision value | 4.74 |
| SVM RNA-class probability | 0.999944 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18843325 90 - 22407834 UUUAAUUAUCCCGUGGCCCUUUCCCUUUUGGCCGUAAACGGUCGGUGCAACAACCUCGUUUCGCCGACCUUGAACCAGUUUCAUUUUUAA ..............((((...........))))......((((((((.(((......))).)))))))).((((.....))))....... ( -23.30) >DroSec_CAF1 9163 90 - 1 UUUAAUUAUCCCUUGGCCCGUUCCCUUUUGGCCGCAAACGGUCGGUGCAACAACCUCGUUUCGCCGACCUUGAACCAGUUUCAUUUUUAA ..............((((...........))))......((((((((.(((......))).)))))))).((((.....))))....... ( -23.30) >DroSim_CAF1 7790 90 - 1 UUUAAUUAUCCCUUGGCCCGUUCCCUUUUGGCCGCAAACGGUCGGUGCAACAACCUCGUUUCGCCGACCUUGAACCAGUUUCAUUUUUAA ..............((((...........))))......((((((((.(((......))).)))))))).((((.....))))....... ( -23.30) >DroEre_CAF1 6279 89 - 1 UUUAAUUAUCCCUUGGCCCUUUCUCUUUUGGCCGUAAAC-GUCGGUGCAACAACCUCGUUUCGCCGACCUUGAACCAGUUUCAUUUUUAA ..............((((...........))))......-(((((((.(((......))).)))))))..((((.....))))....... ( -19.60) >DroYak_CAF1 4180 90 - 1 UUUAAUUAUCCCUUGGCCCUUUCCCUUUUGGCCGUAAACGGUCGGUGCAACAACCUCGUUUCGCCGACCUUGAACCAGUUUCAUUUUUAA ..............((((...........))))......((((((((.(((......))).)))))))).((((.....))))....... ( -23.30) >consensus UUUAAUUAUCCCUUGGCCCUUUCCCUUUUGGCCGUAAACGGUCGGUGCAACAACCUCGUUUCGCCGACCUUGAACCAGUUUCAUUUUUAA ..............((((...........))))......((((((((.(((......))).)))))))).((((.....))))....... (-22.04 = -22.24 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:01 2006