Locus 6745

Sequence ID 2L_DroMel_CAF1
Location 18,842,843 – 18,842,956
Length 113
Max. P 0.692602
window10772

overview

Window 2

Location 18,842,843 – 18,842,956
Length 113
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 87.29
Mean single sequence MFE -31.09
Consensus MFE -18.98
Energy contribution -21.60
Covariance contribution 2.62
Combinations/Pair 1.03
Mean z-score -2.82
Structure conservation index 0.61
SVM decision value 0.33
SVM RNA-class probability 0.692602
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18842843 113 + 22407834
CAAGAAGGAGGGGUGUGGAACUGGGAGGGGUGGGGGUUGGUAGAGAGGAGGAAGCAGAUAGGAAACUUUGUCUGUGAAAAACUCAGUCUGCAGCUAUUUCACUUCCUUGAAAU
....((((((((((.....)))....(..((((......(((((...(((...((((((((....))..))))))......)))..)))))..))))..).)))))))..... ( -33.40)
>DroSec_CAF1 8670 110 + 1
CAAGAAGAAGAGGUGGGGAACUGGAAGGGGUGGGGG---GUAGAGAAGAGGAAGCAGAUAGGAAACUUUGUCUGUGAAAAACUCAGUCUGCAGCUAUUUCACUUCCUUGAAAU
((((..((((....((....))....(..((((...---(((((...(((...((((((((....))..))))))......)))..)))))..))))..).)))))))).... ( -31.00)
>DroSim_CAF1 7293 110 + 1
CAAGAAGAAGAGAUGGGGAACUGGAAGGGGUGGGGG---GUAGAGAAGAGGAAGCAGAUAGGAAACUUUGUCUGUGAAAAACUCAGUCUGCAGCUAUUUCACUUCCUUGAAAU
((((..((((....((....))....(..((((...---(((((...(((...((((((((....))..))))))......)))..)))))..))))..).)))))))).... ( -31.00)
>DroEre_CAF1 5798 99 + 1
CAAGAAGAAGAGGAGCGGCACG------GGGAGGGG--------GGAUAGGAAGCAGAUAGGAAACUUUGUCUGUGAAAAACUCAGUCUGCAGCUAUUUCACUUCCUUGAACU
((((..((((.((((..((..(------.(((..((--------(........((((((((....))..))))))......)))..))).).))..)))).)))))))).... ( -28.94)
>consensus
CAAGAAGAAGAGGUGGGGAACUGGAAGGGGUGGGGG___GUAGAGAAGAGGAAGCAGAUAGGAAACUUUGUCUGUGAAAAACUCAGUCUGCAGCUAUUUCACUUCCUUGAAAU
((((......((........))....(((((((((....(((((...(((...((((((((....))..))))))......)))..))))).....))))))))))))).... (-18.98 = -21.60 +   2.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:59 2006