Locus 6744

Sequence ID 2L_DroMel_CAF1
Location 18,842,040 – 18,842,135
Length 95
Max. P 0.838830
window10771

overview

Window 1

Location 18,842,040 – 18,842,135
Length 95
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 92.46
Mean single sequence MFE -30.43
Consensus MFE -23.75
Energy contribution -24.50
Covariance contribution 0.75
Combinations/Pair 1.14
Mean z-score -2.37
Structure conservation index 0.78
SVM decision value 0.74
SVM RNA-class probability 0.838830
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18842040 95 + 22407834
CCUGUUGUUGUUGUU-----UGCUGGUUGGUACAUAAAAAUAAAUUAUGGCCAUGCCCCUAAAAAUAGCAGUAGGAAUUACAAGGAGCAAGGAUCGCUCG
((((((((((((.((-----((..(((((((.(((((.......))))))))).)))..)))))))))))))))).........((((.......)))). ( -26.60)
>DroSim_CAF1 6139 98 + 1
CCUGUUGUUGUUGCUGGCGCUGCUGGUU-GUACAUAAAAAUAAAUUAUGGCCAUGCCCCUAA-AAUAGCAGCAGGAAAUACAAGGAGCAAGGAUCGCUCG
((((((((((((...((.((...((((.-.((.............))..)))).)).))...-)))))))))))).........((((.......)))). ( -33.12)
>DroEre_CAF1 4951 99 + 1
CCUGUUGUUGUUGCUGGCGCUGCUGCUU-GUACAUAAAAAUAAAUUAUGGCCGUGCCCCUAAAAAUAGCAGCAGGAAUUACAAGGAGCAAGGAUCGCUCG
((((((((((((...((((((((.....-)))(((((.......)))))...)))))......)))))))))))).........((((.......)))). ( -31.00)
>DroYak_CAF1 2814 99 + 1
CCUGCUGUUGUUGCUGGCGCUGCUGGUU-GUACAUAAAAAUAAAUUAUGACCAUGCCCCUAAAAAUAGCAGCAGGAAUUACAAGGAGCAAGGAUCGCUGG
((((((((((((...((.((...((((.-.((.............))..)))).)).))....))))))))))))..........(((.......))).. ( -31.02)
>consensus
CCUGUUGUUGUUGCUGGCGCUGCUGGUU_GUACAUAAAAAUAAAUUAUGGCCAUGCCCCUAAAAAUAGCAGCAGGAAUUACAAGGAGCAAGGAUCGCUCG
((((((((((((...((.((...((((.....(((((.......))))))))).)).))....)))))))))))).........((((.......)))). (-23.75 = -24.50 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:58 2006