Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,841,684 – 18,841,780 |
Length | 96 |
Max. P | 0.999509 |
Location | 18,841,684 – 18,841,780 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 93.83 |
Mean single sequence MFE | -12.64 |
Consensus MFE | -11.64 |
Energy contribution | -11.68 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.06 |
Mean z-score | -2.25 |
Structure conservation index | 0.92 |
SVM decision value | 3.67 |
SVM RNA-class probability | 0.999509 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18841684 96 + 22407834 CCCCGCCACCCACUCACACAAACACCAUCACAUACAGAUGUGCACACAUAAGAACACAAGCAAUUUUCAAAAGAUUUCGCUGGCCAAAAAAAUAAA ....(((.....................(((((....)))))................(((.....((....))....))))))............ ( -9.30) >DroSec_CAF1 7536 96 + 1 CCCCGCCACCCACUCACACAAACACCAUCACAUACAGAUGUGCGCACAUAAGAACACAAGCAAUUUUCUAAAGAUUUUGCUGGCGCAAAAAAUAAA ...((((...............................((((..(......)..))))(((((...((....))..)))))))))........... ( -15.30) >DroSim_CAF1 5778 94 + 1 U-CCGCCACCCACUCACACAAACACCAUCACAUACAGAUGUGCACACAUAAGAACACAAGCAAUUUUCUAAAGAUUUUGCUGGC-CAAAAAAUAAA .-..(((.....................(((((....)))))................(((((...((....))..))))))))-........... ( -13.10) >DroEre_CAF1 4581 95 + 1 CCCCGCCACCCACUCACACAAACACCAUCACACGCAGAUGUGCACACAUAAGAACACAGGCAAUUUUCAAAAGAUUUUGCUGGC-CAAAAAAUAAA ....(((...............(((.(((.......))))))................(((((...((....))..))))))))-........... ( -12.50) >DroYak_CAF1 2452 95 + 1 CCCCGCCACCAUCUCAUACAAACACCAUCACACACAGAUGUGCACACAUAAGAACACAAGCAAUUUUCAAAAGAUUUUGCUGGC-CAAAAAAUAAA ....(((....(((........(((.(((.......))))))........))).....(((((...((....))..))))))))-........... ( -12.99) >consensus CCCCGCCACCCACUCACACAAACACCAUCACAUACAGAUGUGCACACAUAAGAACACAAGCAAUUUUCAAAAGAUUUUGCUGGC_CAAAAAAUAAA ....(((...............(((.(((.......))))))................(((((...((....))..))))))))............ (-11.64 = -11.68 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:57 2006