Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,841,458 – 18,841,572 |
Length | 114 |
Max. P | 0.580613 |
Location | 18,841,458 – 18,841,572 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 90.05 |
Mean single sequence MFE | -16.15 |
Consensus MFE | -12.99 |
Energy contribution | -13.55 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.05 |
Mean z-score | -1.41 |
Structure conservation index | 0.80 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.580613 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18841458 114 + 22407834 UGUUUUGCUGCGCGUGUUAACUAAAAACGACAAAAAGUAUAAUAAUACAGCUCAAAAUAAAAAAAUAUAGCUGAAAUUUUACAGAGAAACAAAACCUGGAAGUCACAAAUAAAA (((((..(((.((((...........))).)................(((((................)))))........)))..)))))....................... ( -12.49) >DroSec_CAF1 7310 114 + 1 UGUUUUGCUGCGCGUGUUAAAUAAAAACGACGAAGAGUAUAAUAAUACAGCUCAAAAUAAAAAAAUAAAGCUGAAAUUUUGCAGAGAAACAAAACCUGGAAGUCACAAAUAAAA (((((..((((.((((((.......))).)))...............(((((................))))).......))))..)))))....................... ( -17.79) >DroSim_CAF1 5552 114 + 1 UGUUUUGCUGCGCGUGUUAAAUAAAAACGACAAAGAGUAUAAUAGUACAGCUCAAAAUAAAAAAAUUAAGCUGAAAUUUUGCAGAGAAACAAAACCUGGAAGUCACAAAUAAAA (((((..((((((((...........))).)................(((((................))))).......))))..)))))....................... ( -16.89) >DroEre_CAF1 4361 108 + 1 UGUUUUGCUGCGCGUGUUAAAUAAAAACGAGGAAGAGUAUAA---UACAGCUUAAAAAAUAAA---AAAGCUGAAAUUUUGCAGAGCAACGAAACCUGGAAAUCACAAAUAAAA .((((((.(((.(.(((.((((....((........))....---..((((((..........---.))))))..)))).)))).))).))))))................... ( -17.40) >DroYak_CAF1 2230 110 + 1 UGUUUUGCUGCGCGAGUUAAAUAAAAACGAGAAAGAGUAUAA---UACAGCUCAAAAAAUAAA-AAAAAGCUAAAAUUUUGCAGGGAAACGAAACCUGGAAAUCACAAAUAAAA .(((((.((((.(..(((.......)))..)...((((....---....))))..........-................)))).)))))........................ ( -16.20) >consensus UGUUUUGCUGCGCGUGUUAAAUAAAAACGACAAAGAGUAUAAUA_UACAGCUCAAAAUAAAAAAAUAAAGCUGAAAUUUUGCAGAGAAACAAAACCUGGAAGUCACAAAUAAAA ((((((.((((((((...........)))..................(((((................)))))......))))).))))))....................... (-12.99 = -13.55 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:56 2006