Locus 6741

Sequence ID 2L_DroMel_CAF1
Location 18,840,008 – 18,840,101
Length 93
Max. P 0.944652
window10768

overview

Window 8

Location 18,840,008 – 18,840,101
Length 93
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.77
Mean single sequence MFE -27.08
Consensus MFE -16.78
Energy contribution -17.70
Covariance contribution 0.92
Combinations/Pair 1.19
Mean z-score -2.61
Structure conservation index 0.62
SVM decision value 1.35
SVM RNA-class probability 0.944652
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18840008 93 - 22407834
AAUAACUUCAAAAGGGGCCGGCCACAUAAAUAAACGAUCCAUGGGUUGAUUAACCG------AUUCUCAGUCAGCCAAAGGAUCAUC------------------CGCCGGU---GGAAA
................((((((....(....)...(((((...((((((((.....------......))))))))...)))))...------------------.))))))---..... ( -24.40)
>DroSec_CAF1 5867 93 - 1
AAUAACUUCAAAAGGGGCCGGCCAUAUAAAUAAACGAUCCAUGGGUUGAUUAACCG------AUUCUCAGUCAGCCAAAGGAUCAUC------------------CGCCGGU---GGAAA
................((((((..((....))...(((((...((((((((.....------......))))))))...)))))...------------------.))))))---..... ( -25.50)
>DroSim_CAF1 4157 93 - 1
AAUAACUUCAAAAGGGGCCGGCCAUAUAAAUAAACGAUCCAUGGGUUGAUUAACCG------AUUCUCAGUCAGCCAAAGGAUCAUC------------------CGCCGGU---GGAAA
................((((((..((....))...(((((...((((((((.....------......))))))))...)))))...------------------.))))))---..... ( -25.50)
>DroEre_CAF1 2918 111 - 1
AAUAACUUCAAAAGGGGCCGGCCAUAUAAAUAAACGAUCCAUGGGUUGAUUAACCG------AUUCUCAGUCAGCCAAAGGAUCAUUAAGAUCAGAAAGGAUCAUGGCUGGC---GGAAA
................(((((((((..........(((((...((((((((.....------......))))))))...))))).....((((......)))))))))))))---..... ( -38.40)
>DroYak_CAF1 724 101 - 1
AAUAACUUCAAAAGGGGCCGGCCAUAUAAAUAAACGACCCAUGGGUUGAUUAACCGACGGGGAUUCUCA-UUAGCCAAAGGAUCAUC------------------CGCUGGCCCAAGAAA
..............((((((((........(((.(((((....))))).)))......(((((((((..-........)))))).))------------------)))))))))...... ( -32.80)
>DroPer_CAF1 683 90 - 1
AAGAACAUCAAACACGACCGACUAUAUAAAUAAACGAGGCAUGGGUUGAUUAACCG------AUUC-CACUCAGCCAAAGGAUAGCU------------------C--UAGUUCUAC---
.(((((...............................(((.(((((.((.......------..))-.))))))))...(((....)------------------)--).)))))..--- ( -15.90)
>consensus
AAUAACUUCAAAAGGGGCCGGCCAUAUAAAUAAACGAUCCAUGGGUUGAUUAACCG______AUUCUCAGUCAGCCAAAGGAUCAUC__________________CGCCGGU___GGAAA
................((((((.((....))....(((((...((((((((.................))))))))...)))))......................))))))........ (-16.78 = -17.70 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:55 2006