Locus 6740

Sequence ID 2L_DroMel_CAF1
Location 18,838,020 – 18,838,140
Length 120
Max. P 0.631910
window10767

overview

Window 7

Location 18,838,020 – 18,838,140
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.67
Mean single sequence MFE -33.28
Consensus MFE -26.52
Energy contribution -26.88
Covariance contribution 0.36
Combinations/Pair 1.20
Mean z-score -1.51
Structure conservation index 0.80
SVM decision value 0.20
SVM RNA-class probability 0.631910
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18838020 120 + 22407834
UGAAUUUACCCUGAUUACGGGUCCUGAGUUGGGCGCCAUUUAUUGAUCGGCUAAAUGAGACUAUUUUCCUGCCCGCAUAGGAUUUUUUAUGCAAAAUGUUUAACUCCUUUGUGGGCUGUU
.(((..((..((.(((....((((......))))((((((....))).)))..))).))..))..)))..(((((((.((((.((..(((.....)))...)).)))).))))))).... ( -31.70)
>DroPse_CAF1 1267 120 + 1
UAAAUCUGUCUCGAUGUCGCUCCCUCAGCUGGGUGCCAUCUAUAGAGCGACUGAAGGAGACUAUUUUCCUGCCCGCAUAGGAUUUCUUGUGCAGAAUAUUCAACUCCUUGGUGGGCUGUU
.......(((((...(((((((....((.(((...))).))...))))))).....))))).........(((((((((((....))))))).......((((....)))).)))).... ( -36.70)
>DroSec_CAF1 3909 120 + 1
UGAAUUUACCCUGAUUACGGGUCCUGAGUUGGGCGCCAUUUAUUGAUCGGCCAAAGGAGACUAUUUUCCUGCCUGCAUAGGAUUUUUUAUGCAAAAUGUUUAACUCCUUUGUGGGCUGUU
..........(((((((.((((((......)))).))......)))))))....((((((....))))))(((..((.((((.((..(((.....)))...)).)))).))..))).... ( -31.60)
>DroSim_CAF1 2188 120 + 1
UGAAUUUACCCUGAUUACGGGUCCUGAGUUGGGCGCCAUUUAUUGAUCGGCCAAAGGAGACUAUUUUCCUGCCUGCAUAGGAUUUUUUAUGCAAAAUGUUUAACUCCUUUGUGGGCUGUU
..........(((((((.((((((......)))).))......)))))))....((((((....))))))(((..((.((((.((..(((.....)))...)).)))).))..))).... ( -31.60)
>DroEre_CAF1 940 120 + 1
UGAAUUUACCCUGAUUUCUGGUCCUUAGUUGGGCGCCAUCUAUUGAUCGCCCAAAGGAGACUAUUUUCCUGCCUGCAUAGGACUUUUUAUGCAAAAUAUUUAACUCCUUUGUGGGCUGUU
..................(((((.((..(((((((..(((....))))))))))..))))))).......(((..((.((((.((..(((.....)))...)).)))).))..))).... ( -34.80)
>consensus
UGAAUUUACCCUGAUUACGGGUCCUGAGUUGGGCGCCAUUUAUUGAUCGGCCAAAGGAGACUAUUUUCCUGCCUGCAUAGGAUUUUUUAUGCAAAAUGUUUAACUCCUUUGUGGGCUGUU
..........(((((((.((((((......)))).))......)))))))....((((((....))))))(((((((.((((.((..(((.....)))...)).)))).))))))).... (-26.52 = -26.88 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:54 2006