Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,972,935 – 1,973,039 |
Length | 104 |
Max. P | 0.813387 |
Location | 1,972,935 – 1,973,039 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 95.03 |
Mean single sequence MFE | -22.13 |
Consensus MFE | -18.66 |
Energy contribution | -18.72 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.05 |
Mean z-score | -2.11 |
Structure conservation index | 0.84 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.813387 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1972935 104 + 22407834 CCGCUGGAAAUUCAACAGGCACCCACACCAACUGUUGCCAGCUCACUCACUCCAACAGAACGACCAUUCGAAUGCAUCGGCACUCAAAAAAUAUGAACUUUACU ..(((((.....((((((.............)))))))))))....(((........(((......)))((.(((....))).))........)))........ ( -17.92) >DroSim_CAF1 19381 104 + 1 ACGCUGGAAAUUCAACAGGCACCCACACCAACUGUUGCCAGCUCACUCACUCCCACAGAACGACCAUUCGAAUGCAUCGGCACUCGAAAAAUGUGAACUUUACU ..(((((.....((((((.............)))))))))))....((((((.....)).......(((((.(((....))).)))))....))))........ ( -23.62) >DroEre_CAF1 24463 104 + 1 GCGCUGGAAAUUCAACAGGCACCCACACCAACUGUUGCCAGCUCACUCACUCACACAGCACGAGCAUUCGAAUGCAUCGGCACUCAAAAAAUGUGAACUUUACU ..(((((.....((((((.............)))))))))))((((...........((.(((((((....)))).)))))...........))))........ ( -25.17) >DroYak_CAF1 22577 104 + 1 CCGCUGGAAAUUCAACAGGCACCCACACCAACUGUUGCCAGCUCACUCGCUCCCACAGAACGACCAUUCGAAUGCAUCGGCACUCCAGAAAUGUGAACUUUACU ..(((((.....((((((.............)))))))))))(((((((.((.....)).)))......((.(((....))).)).......))))........ ( -21.82) >consensus CCGCUGGAAAUUCAACAGGCACCCACACCAACUGUUGCCAGCUCACUCACUCCCACAGAACGACCAUUCGAAUGCAUCGGCACUCAAAAAAUGUGAACUUUACU ..(((((.....((((((.............)))))))))))....((((...........((....))((.(((....))).)).......))))........ (-18.66 = -18.72 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:35 2006