Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,836,485 – 18,836,602 |
Length | 117 |
Max. P | 0.578050 |
Location | 18,836,485 – 18,836,602 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.22 |
Mean single sequence MFE | -32.00 |
Consensus MFE | -27.41 |
Energy contribution | -27.97 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.05 |
Mean z-score | -1.90 |
Structure conservation index | 0.86 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.578050 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18836485 117 - 22407834 UAAAAGUGAGCAGUGUGAGGUCGAGGGUGGUUAUAAUAACAUAACCCCACAUCGUUUAAACCACCACCAGAAGCAAAAGAAAGACUC---UGAUUUACUUAAUGCAGCUAAGGCUCAUUG ....(((((((.(((.(.((((((.((.((((((......))))))))...))).....))).))))((((..(........)..))---)).....((((.......))))))))))). ( -28.70) >DroSec_CAF1 2359 120 - 1 UAAAAGUGAGCACUGUGGGGUGGAGGGUGGUUGUAAUAACAUAACCCCACUUCGUUUAAACCACCACCAGAAGCAAAAGAAAGACUUCUUUGACUACCUUAAUGCGGCUAAAGCUCAUUG ....(((((((.(((((((((((((((.((((((......)))))))).))))......))).))).))).((..((((((....))))))..)).................))))))). ( -34.30) >DroSim_CAF1 641 120 - 1 UAAAAGUGAGCACUGUGGGGUGGAGGGUGGUUGUAAUAACAUAACCCCACUUCGUUUAAACCACCACCAGAAGCAAAAGAAAGACUCCUUUGACUACCUUAAUGCGGCUAAAGCUCAUUG ....(((((((...(((((((((((((.((((((......)))))))).))))......))).)))).((..(((.(((..((.(......).))..)))..)))..))...))))))). ( -33.00) >consensus UAAAAGUGAGCACUGUGGGGUGGAGGGUGGUUGUAAUAACAUAACCCCACUUCGUUUAAACCACCACCAGAAGCAAAAGAAAGACUCCUUUGACUACCUUAAUGCGGCUAAAGCUCAUUG ....(((((((...(((((((((((((.((((((......)))))))).))))......))).)))).((..(((.(((..((.(......).))..)))..)))..))...))))))). (-27.41 = -27.97 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:53 2006