Locus 6734

Sequence ID 2L_DroMel_CAF1
Location 18,823,257 – 18,823,373
Length 116
Max. P 0.983196
window10753

overview

Window 3

Location 18,823,257 – 18,823,373
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 72.39
Mean single sequence MFE -27.49
Consensus MFE -10.38
Energy contribution -10.94
Covariance contribution 0.56
Combinations/Pair 1.35
Mean z-score -2.27
Structure conservation index 0.38
SVM decision value 1.94
SVM RNA-class probability 0.983196
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18823257 116 + 22407834
AAAUGAUGAGUGAGUGCUGGUGUUAUUAUAUUUUAGGUGAUACGAACU-UGAAAUGUGUAAGCGUAACCC-CAGAUGUACUAUUAUACAAUAG--UAUUAUAUUCUGAGCUUAUCUCAGA
....((((((((((((((((.(((((((((((((((((.......)))-))))))))).....))))).)-)))..((((((((....)))))--)))..)))))...)))))))..... ( -31.90)
>DroSec_CAF1 92152 106 + 1
AAAUGAUGAGUGAGUGGUGGUGUUAUUAUAUUUCAAGUAAUACGAACUCUGAAAUGUGUAAACGUGACCCCCAGAU-------U-----AUAU--CAUUAUAUUCAGAACUUAUCUCUGA
..(((((((((((.(((.((.(((((((((((((((((.......))).))))))))).....))))))))))..)-------)-----)).)--))))))..(((((.......))))) ( -26.40)
>DroSim_CAF1 88389 106 + 1
AAAUGAUGAGUGAGUGGUGGUGUUAUUAUAUUUCAAGUAAUACGAACUCUGAAAUGUGUGAGCGUAACCCCCAGAU-------U-----AUAU--CAUUAUAUUCAGAGCUUAUCUCUGA
..(((((((((((.(((.((.(((((((((((((((((.......))).))))))))).....))))))))))..)-------)-----)).)--))))))..((((((.....)))))) ( -28.70)
>DroEre_CAF1 86722 114 + 1
AUGUGAUAA----GUGGUGGUGUUAUUACAUUUCAAACGAUAUGAACUCUGAAAUUUGUCAGCGUAACCCCCAGAUAUACUAUUAUG--GUAUUCAGCUUCAUUAAGCACUUAUCACUGC
..(((((((----((((.((.(((((..(((.((....)).)))....((((......)))).))))))))).((.(((((.....)--)))))).((((....)))))))))))))... ( -28.70)
>DroYak_CAF1 87945 102 + 1
AUGUGACAAGUGAGUGGUGAUGUUAUUACUUUUCAAGCGAUAUGAACUCUGAAAUGUGU-AUCGUA---------UG------UAUU--AUAUUUAGCUUUCGUCAGCGCUUAUCUCAGC
.((.((.(((((..((..((.((((........((.(((((((..((........))))-))))).---------))------....--.....))))..))..)).))))).)).)).. ( -21.73)
>consensus
AAAUGAUGAGUGAGUGGUGGUGUUAUUAUAUUUCAAGUGAUACGAACUCUGAAAUGUGUAAGCGUAACCCCCAGAU_______UAU___AUAU__AAUUAUAUUCAGAGCUUAUCUCUGA
....(((((((((((....((((((((........))))))))..))))....((((....))))...........................................)))))))..... (-10.38 = -10.94 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:42 2006