Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,818,981 – 18,819,072 |
Length | 91 |
Max. P | 0.965105 |
Location | 18,818,981 – 18,819,072 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 86.43 |
Mean single sequence MFE | -26.60 |
Consensus MFE | -20.22 |
Energy contribution | -20.66 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.23 |
Mean z-score | -2.50 |
Structure conservation index | 0.76 |
SVM decision value | 1.58 |
SVM RNA-class probability | 0.965105 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18818981 91 + 22407834 AACACGCAUACAUCGGCUGAUAAUAAAUCGGCAGACUUGUGCUUGUCUUGAUAGACUUUCUCUACAUCCGGUAGUUGAGUCUCGUGUGCAC .....((((((((((((((((.....))))))((((........))))))))((((((...((((.....))))..)))))).)))))).. ( -30.50) >DroSec_CAF1 81537 83 + 1 AUCACGCAUACAUCGACUGAUAAUGAGUCGGCAGACUU------GUCUUAAUAGACUUU--CUACAGCCGGUAGUUAUGUCUCGUGUGCAC .....((((((...(((..(((((...((((((((...------((((....))))..)--))...)))))..))))))))..)))))).. ( -24.20) >DroSim_CAF1 84128 83 + 1 AUCACGCAUACAUCGACUGAUAAUGAGUCGGCAGACUU------GUCUUAAUAGACUUU--CUACAGCCGGUAGUUGGGUCUCGUGUGCAC .....((((((..(((((.......)))))(.((((((------((((....))))...--((((.....))))..))))))))))))).. ( -25.40) >DroEre_CAF1 81984 83 + 1 ACCACGCAUACUUCGGCUGAUAAUGAAUCGGCAGACUU------GUCUUAAUAGGCUUU--CUAAUGCCGGUAGUUCAUUCUCGUGAGCAC (((..((((......((((((.....))))))(((...------((((....))))..)--)).)))).))).((((((....)))))).. ( -22.40) >DroYak_CAF1 82548 83 + 1 ACCACGCGUGCAUCGGCUGAUAAUGAAUCGGCAGACUU------GUCUUAAUAGACUUU--CUACUGCCGGUAGUUAAGUCUCGUGUGCGC .....(((..(((.((((..((((..((((((((....------((((....))))...--...)))))))).))))))))..)))..))) ( -30.50) >consensus ACCACGCAUACAUCGGCUGAUAAUGAAUCGGCAGACUU______GUCUUAAUAGACUUU__CUACAGCCGGUAGUUAAGUCUCGUGUGCAC .....((((((....((((((.....))))))((((........))))....((((((...((((.....))))..)))))).)))))).. (-20.22 = -20.66 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:41 2006