Locus 6731

Sequence ID 2L_DroMel_CAF1
Location 18,816,331 – 18,816,447
Length 116
Max. P 0.559473
window10749

overview

Window 9

Location 18,816,331 – 18,816,447
Length 116
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 81.84
Mean single sequence MFE -33.87
Consensus MFE -26.68
Energy contribution -26.72
Covariance contribution 0.03
Combinations/Pair 1.35
Mean z-score -1.28
Structure conservation index 0.79
SVM decision value 0.05
SVM RNA-class probability 0.559473
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18816331 116 - 22407834
UCACCCACACUUAAGUCCACAAUAUCGGUGAGCAAGGGCAUUCCUUGAAAGACGUAAUCCGUGUAGUUGGCCACUGGUUUCUCCAGUGGAAAAUAGCUAUACAUGCUAAUGUUGUG
.................((((((((..((...(((((.....))))).............(((((((((.(((((((.....)))))))....)))))))))..))..)))))))) ( -39.10)
>DroVir_CAF1 126556 116 - 1
GCACCCACCUGCAGAUCCACAAAGUCCGUGAGUAGCGGCAUGCCCUCGAAUACGUAGUCCGUGUAAUUGGCCAUCGGCUGCUUCAGCGGAAAAUAGCUAUACAUGCUGACAUUGUG
(((......))).....(((((..((((((((((((.(.(((.((....(((((.....)))))....)).)))).)))))))..)))))...((((.......))))...))))) ( -34.70)
>DroEre_CAF1 79516 116 - 1
UCACCUACCCGUAAGUCAACGACGUCCGUGAGCAGCGGCAUUCCUUGAAAGACGUAAUCCGUGUAGUUGGCCACUGGUUUCUCCAGUGGAAAAUAGCUAUACAUGCUGAUGUUGUG
..................(((((((((....).(((((.((((.((....)).).)))))(((((((((.(((((((.....)))))))....)))))))))..))))))))))). ( -37.60)
>DroYak_CAF1 79550 116 - 1
UCACCUACCCUUAAGUCAACAACGUCCGUGAGCAGAGGCAUUCCUUGAAAGACGUAGUCCGUGUAGUUGGCCACUGGUUUCUCCAGUGGAAAAUAGCUAUACAUGCUGACGUUGUG
..................((((((((....((((((((....))))..............(((((((((.(((((((.....)))))))....))))))))).)))))))))))). ( -39.80)
>DroMoj_CAF1 124598 116 - 1
UCAUUUACCUUCAGAUCCACGAAAUCCGUGAGCAGCGGCAUGCCCUCAAAGACGUAAUCCGUGUAGUUGGCCAUCGGCUCCUUCAGCGGAAAGUAACUGUACAUGCUGAUAUUGUG
.................((((.....)))).(((.(((((((..(......((....(((((..((..((((...)))).))...)))))..))....)..)))))))....))). ( -26.50)
>DroAna_CAF1 73947 116 - 1
UCACUCACCUGUAAGUCCACAAUAUCUGUAAGCACCGGCAUCCCUUGGAAAACGUAGUCCGUAUAGUUGUCUAUUGGCUUCUCAAGUGGAAAAUAGCUAUACAUGCUAAUGUUGUG
.................((((((((..(((.((....)).......(((........)))((((((((((...((.(((.....))).))..)))))))))).)))..)))))))) ( -25.50)
>consensus
UCACCCACCCGUAAGUCCACAAAAUCCGUGAGCAGCGGCAUUCCUUGAAAGACGUAAUCCGUGUAGUUGGCCACUGGCUUCUCCAGUGGAAAAUAGCUAUACAUGCUGAUGUUGUG
.................(((((((((....((((..((....))................(((((((((.(((((((.....)))))))....))))))))).))))))))))))) (-26.68 = -26.72 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:38 2006