Locus 6730

Sequence ID 2L_DroMel_CAF1
Location 18,804,960 – 18,805,053
Length 93
Max. P 0.808085
window10748

overview

Window 8

Location 18,804,960 – 18,805,053
Length 93
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 69.55
Mean single sequence MFE -22.62
Consensus MFE -4.82
Energy contribution -6.42
Covariance contribution 1.60
Combinations/Pair 1.17
Mean z-score -1.98
Structure conservation index 0.21
SVM decision value 0.64
SVM RNA-class probability 0.808085
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18804960 93 + 22407834
AAGGGAGUGGCAGGACUCGACUA-GAUGAGUUUCACUUAGAAAAAUCAUGGUGUGUGAAUUUAUAUUGAAUGAUAUAGAAAU--------------GCAUAUCCAUAU
....((((((...((((((....-..)))))))))))).........((((((((((..((((((((....))))))))..)--------------))))).)))).. ( -21.80)
>DroSec_CAF1 67755 93 + 1
AAGGGAGUGGCAGGACACGACUA-GAUGAGGUUCACUUAGAAAAAUCAUGGUGUGUGAAUUUAUACUGAAUUAUUUGGAAAU--------------GCAUAUCCCUAU
.(((((...(((..((((.((((-(((....(((.....)))..))).)))))))).........(..(.....)..)...)--------------))...))))).. ( -21.90)
>DroSim_CAF1 68321 93 + 1
AAGGGAGUGGCAGGACACGACUA-GAUGAGGUUCACUUAGAAAAAUCAUAGUGUGUGAAACUAUAUUUAAUUAUGUGGAAAU--------------GCAUAUCUCUAU
.(((((...(((..((((.((((-(((....(((.....)))..))).))))))))....((((((......))))))...)--------------))...))))).. ( -23.00)
>DroEre_CAF1 68469 97 + 1
GAGGGAG-AGCAGGAUUCGACGAUGAUGAGGUACACUAAGGAAAAUCUUGGUGUAU----------UGAUCUAUAUGGAAAUGGUAUUUAUUAGGAGCAUAGCUCUAU
.....((-(((.............(((..(((((((((((......))))))))))----------).)))..((((....((((....))))....))))))))).. ( -22.90)
>DroYak_CAF1 68301 98 + 1
--------UGCAGGAUUCGACUA-GAUGAUGUUCACUAUGGAAAAUCUUGGUGUGUGAAUUUCUUAUGAUUUAUAUGGAAAUGGUAUUUAUAA-GAACCCAUUUCCGU
--------..(((((((...(((-(.((.....))))).)...)))))))..(((((((((......)))))))))((((((((..((.....-))..)))))))).. ( -23.50)
>consensus
AAGGGAGUGGCAGGACUCGACUA_GAUGAGGUUCACUUAGAAAAAUCAUGGUGUGUGAAUUUAUAUUGAAUUAUAUGGAAAU______________GCAUAUCUCUAU
.(((((...((.(....).((((.(((....(((.....)))..))).))))............................................))...))))).. ( -4.82 =  -6.42 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:37 2006