Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,972,590 – 1,972,688 |
Length | 98 |
Max. P | 0.741761 |
Location | 1,972,590 – 1,972,688 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 74.92 |
Mean single sequence MFE | -34.80 |
Consensus MFE | -22.70 |
Energy contribution | -23.70 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.16 |
Mean z-score | -1.65 |
Structure conservation index | 0.65 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.741761 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1972590 98 + 22407834 UCCAGGUGAG-CUGCUGCGAGCA---AAAGGCCCGGGCAAAAGGCUCAACGGGUGGGUAAAUAGAAUCCAUCUAUGUGUGCAGUAUGUGUU----CGCGCACCGAU ....((((.(-(((((((((((.---....((....)).....))))...((((((((.......))))))))......))))))......----.)).))))... ( -34.81) >DroSim_CAF1 19037 98 + 1 ACCAGGUGAG-CUGCUGCGAGCA---AAAGGCCCGGGCAAAAGGCUCAACGGGUGGGUAAAUAGAGCCCAUCUAUGUGUGCAGCAUGUGUU----CGGGCACCGAU ....(((..(-((......))).---....(((((((((....((.((..((((((((.......))))))))...)).))......))))----))))))))... ( -38.70) >DroEre_CAF1 24142 78 + 1 UCCAGGUAACUCACCUGCGA--------GUUCCCGGGCAAAAGGCUCAACGGGUGGGUAAAUAGAGCCCAUCUAUGUGUGCAGCAG-------------------- .((.((.(((((......))--------))))).))((.....((.((..((((((((.......))))))))...)).)).))..-------------------- ( -26.10) >DroYak_CAF1 22204 106 + 1 UCCGGGCAACUCACCUGCGAGCUCCCUAGUUCCCGGGCAAAGGGCUCAACGGGUGGGUAAAUAGAGCCCAUCUAUGUAUGCAGUAUGUGUUCGUUCGGGCGCGGAU ((((.((.(((((((((.((((((....(((....)))...))))))..))))))))).....((((.(((...((....))..))).))))......)).)))). ( -39.60) >consensus UCCAGGUAAC_CACCUGCGAGCA___AAAGGCCCGGGCAAAAGGCUCAACGGGUGGGUAAAUAGAGCCCAUCUAUGUGUGCAGCAUGUGUU____CGGGCACCGAU .............((((((.((............((((.....))))...((((((((.......))))))))..)).))))))..(((((......))))).... (-22.70 = -23.70 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:34 2006