| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,802,134 – 18,802,232 |
| Length | 98 |
| Max. P | 0.760589 |
| Location | 18,802,134 – 18,802,232 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 86.33 |
| Mean single sequence MFE | -30.07 |
| Consensus MFE | -23.40 |
| Energy contribution | -23.58 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.760589 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18802134 98 + 22407834 AAAGCUCAGCCACAACUUUUUGGCGCGCUCUCUUUGGACAGGCUGUAAAAACAGGAGGA----AACUGGUGAAAAAGGGGUGUUAAGGGGGUGGUGUGAGGG ....(((((((((..(((((((((((.((((.(((..((...((((....)))).((..----..)).))..))))))))))))))))))))))).)))).. ( -32.30) >DroSec_CAF1 64681 95 + 1 AAAGCUCAGCCACAACUUUUUGGCGCGUUCUCUUUAGGGAGGCUGUAAAA---UGAGGA----AACUGACGAAAAAGGGGUGUUAAGGGGGUGUUGUGGGGG ....(((.((.(((.(((((((((((..(((((....)))))((......---(.((..----..)).)......))..))))))))))).))).)).))). ( -24.40) >DroSim_CAF1 65277 98 + 1 AAAGCUCAGCCACAACUUUUUGGCGCGUUCUCUUUGGGCAGGCUGCAAAAACAGGAGGA----AACUGGCGAAAAAGGGGUGUUAAGGGGGUGGUGUGGGGG ....(((((((((..(((((((((((...((((((..((...(((......))).((..----..)).))...)))))))))))))))))))))).)))).. ( -30.60) >DroYak_CAF1 65268 101 + 1 AAAGCUCAGCCACAACUUUUUGGCGCGCUCGCUUUGGGCAGGCUGUGGGAACAGGGGGAGGGGAACUGUCGGAGAAGGGGUGUUA-GGGGGAGGUGUGAGGG ....((((..(((..(((((((((((.(((..(((.(((((.((.((....)).)).........))))).)))..)))))))))-)))))..))))))).. ( -33.00) >consensus AAAGCUCAGCCACAACUUUUUGGCGCGCUCUCUUUGGGCAGGCUGUAAAAACAGGAGGA____AACUGGCGAAAAAGGGGUGUUAAGGGGGUGGUGUGAGGG ....(((((((((..(((((((((((.((((.(((.(.(((........................))).).))).)))))))))))))))))))).)))).. (-23.40 = -23.58 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:36 2006