| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,795,113 – 18,795,222 |
| Length | 109 |
| Max. P | 0.672211 |
| Location | 18,795,113 – 18,795,222 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 80.22 |
| Mean single sequence MFE | -20.92 |
| Consensus MFE | -16.08 |
| Energy contribution | -16.30 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.672211 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18795113 109 + 22407834 CUAAUUUGCAUUUAUAUUCAUAAUCUUAGGCAUUGCGUCAUGAAAUAUUGCAUGUCCCGAACUUGUGACACUUUAAUUGCCCAUUUGG-UACUAAGCCU------ACACUGGCCGA ((((...(((.(((...((((((..(..(((((.(((...........)))))).))..)..)))))).....))).)))....))))-......(((.------.....)))... ( -18.80) >DroVir_CAF1 90678 99 + 1 CUAAUUUGCAUUUAUAUUCAUAAUCUUGGGCAUUGCGUCAUGUAAUAUCGCAUGUCCCGAACUUGUGACACUUUAAUUGCUUGCUGG-AUCUCACAUCCA---------------- .......(((.(((...((((((..((((((((.(((...........)))))).)))))..)))))).....))).))).....((-((.....)))).---------------- ( -23.30) >DroGri_CAF1 81489 112 + 1 CUAAUUUGCAUUUAUAUUCAUAAUCUUGGCCAUUGCGUCAUGAAAUAUUGCAUGUCCCGAACUUGUGACACUUUAAUUGCUCACUGGGAU--UACAUCCACUACUUCACUUGAC-- .......(((.(((...((((((..((((....((((...........))))....))))..)))))).....))).)))......((((--...))))...............-- ( -16.60) >DroWil_CAF1 53258 108 + 1 CUAAUUUGCAUUUAUAUUCAUAAUCUUAGGCAUUGCGUCAUGAAAUAUUGCAUGUCCCGAACUUGUGACACUUUAAUUGCCCAUUUGGGUGCCA--CCU------ACAAUACUUCA .......((........((((((..(..(((((.(((...........)))))).))..)..))))))..........((((....))))))..--...------........... ( -17.30) >DroMoj_CAF1 90048 97 + 1 CUAAUUUGCAUUUAUAUUCAUAAUCUUGGGCAUUGCGUCAUGAAAUAUUGCAUGUCCCGAACUUGUGACACUUUAAUUGCUCACCGG-AC--UACAUCCA---------------- .......(((.(((...((((((..((((((((.(((...........)))))).)))))..)))))).....))).))).....((-(.--....))).---------------- ( -21.10) >DroAna_CAF1 53451 109 + 1 CUAAUUUGCAUUUAUAUUCAUAAUCUUGGGCAGUGCGUCAUGAAAUAUUGCAUGUCCCAAACUUGUGACACUUUAAUUGCCCAUUUGC-UGCUAAGCCU------GCAGUGAAAGA .......(((.(((...((((((..(((((..(((((...........)))))..)))))..)))))).....))).)))...((..(-(((.......------))))..))... ( -28.40) >consensus CUAAUUUGCAUUUAUAUUCAUAAUCUUGGGCAUUGCGUCAUGAAAUAUUGCAUGUCCCGAACUUGUGACACUUUAAUUGCCCACUGGGAU_CUACACCC_______CA_U______ .......(((.(((...((((((..(((((((.((((...........)))))).)))))..)))))).....))).))).................................... (-16.08 = -16.30 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:31 2006