Locus 6726

Sequence ID 2L_DroMel_CAF1
Location 18,791,082 – 18,791,190
Length 108
Max. P 0.920536
window10740

overview

Window 0

Location 18,791,082 – 18,791,190
Length 108
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 92.75
Mean single sequence MFE -26.98
Consensus MFE -22.46
Energy contribution -23.40
Covariance contribution 0.94
Combinations/Pair 1.06
Mean z-score -2.29
Structure conservation index 0.83
SVM decision value 1.13
SVM RNA-class probability 0.920536
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18791082 108 + 22407834
GAUGCUUAAAGACGCACUUAAGUCAUGUAAGUAAUACAUUUCUUAUCGACUUGAAGUUGUUAGUAGUAACUAUUAUGCAAUUGUAAGUACGGCUAGUGCGUAAUUAAU
.....((((..(((((((((((..(((((.....)))))..))))((((((((.((((((((((((...)))))).)))))).))))).)))..)))))))..)))). ( -28.70)
>DroSec_CAF1 53687 108 + 1
GAUGCUUAAAGACGUACUUAAGUCAUGUAAGUAAUACAUUUCUUAUCGACUUGUAGUUGUUAGUAGUAACUAUUAUGCAAUUGUAAGUACGGCUGGUGCGUAAUUAAC
.....((((..(((((((((((..(((((.....)))))..))))(((((((((((((((((((((...)))))).)))))))))))).)))..)))))))..)))). ( -28.00)
>DroSim_CAF1 52706 108 + 1
GAUGCUUAAAGACGUACUUAAGUCAUGUAAGUAAUACAUUUCUUAUCGACUUGUAGUUGUUAGUAGUAACUAUUAUGCAAUUGUAAGUACGGCUGGUGCGUAAUUAAC
.....((((..(((((((((((..(((((.....)))))..))))(((((((((((((((((((((...)))))).)))))))))))).)))..)))))))..)))). ( -28.00)
>DroYak_CAF1 54497 108 + 1
GAUAGUAAAAGACGUACUUAAGUCAUGUACGUAAUACAUUUGUUAUCGAGUUGUAGUUGUAAGUUGGAACUAUUAUGCAAUUGUAAAUACGGCUUGUGCGUAAUAAAC
....(((....((((((.........))))))..))).(((((((((((((((((......(((((.(.......).))))).....)))))))))...)))))))). ( -23.20)
>consensus
GAUGCUUAAAGACGUACUUAAGUCAUGUAAGUAAUACAUUUCUUAUCGACUUGUAGUUGUUAGUAGUAACUAUUAUGCAAUUGUAAGUACGGCUGGUGCGUAAUUAAC
...........(((((((..(((((((((.....))))).........((((((((((((((((((...)))))).))))))))))))..)))))))))))....... (-22.46 = -23.40 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:30 2006