Locus 6723

Sequence ID 2L_DroMel_CAF1
Location 18,768,402 – 18,768,498
Length 96
Max. P 0.561581
window10734

overview

Window 4

Location 18,768,402 – 18,768,498
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 86.75
Mean single sequence MFE -30.22
Consensus MFE -20.68
Energy contribution -21.42
Covariance contribution 0.74
Combinations/Pair 1.15
Mean z-score -1.82
Structure conservation index 0.68
SVM decision value 0.06
SVM RNA-class probability 0.561581
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18768402 96 + 22407834
AGGCUACUGCCACCGGUAUUGGUAGUGGUGCUCGCAUUGGUAGUGGUACUAGUUAGUUAGCAGGGGUGGUGGGCAGUAGACAACCACCAGGUGACA
..((((((((((.......))))))))))(((.(((((((((....)))))))..)).)))...((((((.(........).)))))).(....). ( -33.80)
>DroSec_CAF1 31479 92 + 1
AGGCUACUGACACUGGUAGUGGUAGUGGUACUCGUAUUGGUAGUGGUACUAG----UUAGCAGGGGUGGUGGGCAGUGGACAACCACCAGGUGACA
..((..(((..(((((((.((.((.(((((....))))).)).)).))))))----)...)))..))(((((...........))))).(....). ( -29.00)
>DroSim_CAF1 30133 92 + 1
AGGCUACUGCCACCGGUAGUGGUAGUGGUACUCGUAUUGGUAGUGGUACUAG----UUAGCAGGGGUGGUGGGCAGUGGACAACCACCAGGUGACA
..(((((((((((.....))))))))))).(..(((((((((....))))))----)..))..)((((((.(........).)))))).(....). ( -34.00)
>DroEre_CAF1 32273 80 + 1
AGGCUGCAGGCACUAGUA------------GUGGUAUUGGUAGUGGUACUAG----UUAGCAGGGGUGGUGGGCAGUGGACAACCACCAGGUGACA
...((((....(((((((------------.((.((....)).)).))))))----)..)))).((((((.(........).)))))).(....). ( -25.60)
>DroYak_CAF1 32264 92 + 1
AGGCUACAGGCACUAGUAUUGGUAGUGGCAGUGGUAUUGGUAGUGGUACUAG----UUAGCAGGGGUGGUGGGCAGUGGACAACCACCAGGUGACA
..(((((.((.((((.(((..(((.(......).)))..))).)))).)).)----.))))...((((((.(........).)))))).(....). ( -28.70)
>consensus
AGGCUACUGCCACUGGUAGUGGUAGUGGUACUCGUAUUGGUAGUGGUACUAG____UUAGCAGGGGUGGUGGGCAGUGGACAACCACCAGGUGACA
..((((((...(((((((..((((....))))..)))))))))))))............((...((((((.(........).))))))..)).... (-20.68 = -21.42 +   0.74)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:25 2006