Locus 6722

Sequence ID 2L_DroMel_CAF1
Location 18,768,274 – 18,768,379
Length 105
Max. P 0.637825
window10733

overview

Window 3

Location 18,768,274 – 18,768,379
Length 105
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 78.23
Mean single sequence MFE -29.03
Consensus MFE -14.59
Energy contribution -15.90
Covariance contribution 1.31
Combinations/Pair 1.17
Mean z-score -1.99
Structure conservation index 0.50
SVM decision value 0.22
SVM RNA-class probability 0.637825
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18768274 105 + 22407834
GCAUAAUUGCAUAUCAAUUUUUUCUCUCUCUGCAUCUUUA-AACAAUUCCUAGGGGAAAUGAGUGUUGAAUAUGAGCAGAGAGGUUGAGGAGAAAGCUGUGGUGCU
(((....))).(((((.((((((((((((((((.((....-((((.((((....)))).....))))......)))))))))....)))))))))....))))).. ( -29.90)
>DroSec_CAF1 31352 104 + 1
GCAUAAUUGCUUACCAA-UUUUUCUCUCUCUGCAUCUUUA-AACAAUUCCUAUGGGAAAUGAGUGUUGAAUAUGAGCAGAGAGGUUGAGGAGAAAGCUGAGGUGCU
((((....((((.....-(((((((((((((((.((....-((((.((((....)))).....))))......)))))))))))..)))))).))))....)))). ( -30.10)
>DroSim_CAF1 30006 104 + 1
GCAUAAUUACUUAGCAU-UUUUUCUCUCUCUGCAUCUUUA-AACAAUUCCUAGGGGAAAUGAGUGUUGAAUAUGAGCAGAGAGGUUGAGGAGAAAGCUGAGGUGCU
((((.....((((((.(-(((((((((((((((.((....-((((.((((....)))).....))))......)))))))))....))))))))))))))))))). ( -35.20)
>DroEre_CAF1 32131 102 + 1
GGGUAAUUGU-UACCUA--AUUUCUCUCUCUGCAUCUUUA-AGCAAUUCCUAGGGGAAAUGAGUGUUGAAUAUGAGCAGAGAGGUUGAGGAGCAGGCCGAGGUGCU
.(((...(((-(.((((--(((((((((((....((..((-..((.((((....)))).))..))..))....))).))))))))).))))))).)))........ ( -31.40)
>DroYak_CAF1 32124 103 + 1
CGGUAGUUGU-UAGCUA-UAUUUCUCUCUCUGCAUCUUUA-AACAAUUCCUAGGGGAAACGAGUGUUGAAUAUGAGCACAGAGGUUGAGGAGAAAGCUGAGGUGCU
.((((.(..(-(((((.-...(((((.(((.((.(((...-.....((((....))))....(((((.......)))))))).)).))))))))))))))).)))) ( -26.70)
>DroAna_CAF1 28579 86 + 1
-------UGC-UCCCGAUUUUCUUUCAGUUCGCUUCCGAAAAAAAGUUCGUAGGGGAAAUGAGUGUUGAAUGCUAGUUCAGAGGUUGAGUG---AGU---------
-------.((-((((((((((..((((.(((.(((.((((......)))).))).))).))))...(((((....)))))))))))).).)---)))--------- ( -20.90)
>consensus
GCAUAAUUGC_UACCAA_UUUUUCUCUCUCUGCAUCUUUA_AACAAUUCCUAGGGGAAAUGAGUGUUGAAUAUGAGCAGAGAGGUUGAGGAGAAAGCUGAGGUGCU
....................((..(((((((((.((.....((((.((((....)))).....))))......)))))))))))..))......(((......))) (-14.59 = -15.90 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:24 2006