Locus 6721

Sequence ID 2L_DroMel_CAF1
Location 18,766,129 – 18,766,237
Length 108
Max. P 0.615298
window10732

overview

Window 2

Location 18,766,129 – 18,766,237
Length 108
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 76.01
Mean single sequence MFE -14.53
Consensus MFE -9.94
Energy contribution -10.06
Covariance contribution 0.11
Combinations/Pair 1.11
Mean z-score -1.08
Structure conservation index 0.68
SVM decision value 0.17
SVM RNA-class probability 0.615298
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18766129 108 - 22407834
UCAAAAACAAACACGACCAUCAUCAUCCUCCCACACAAGUGGUUAAUGCAAAAGUUUAGUCCCAAUAUUUACAAAUGUUUUACGUUGUAAUAAAUAAAUGACCCACAA
........((((..((......))......((((....))))...........)))).(((....((((((..((((.....))))....))))))...)))...... (  -9.70)
>DroPse_CAF1 39556 84 - 1
UC---------------------CAUGCG--CCGACAAGUACUUAAUGCAAAAGUUUUGUUCCAAUAUUUACAAAUGUUUUGCGUUGUAAUAAAUAAAUGAAGUACA-
..---------------------......--.......(((((((((((((((..(((((..........)))))..))))))))))..............))))).- ( -14.73)
>DroEre_CAF1 30089 105 - 1
UCAAAAACAAACACGACCAUC---AUCCUCCCACACAAGUGGUUAAUGCAAAAGUUUUGUCCCAAUAUUUACAAAUGUUUUGCGUUGUAAUAAAUAAAUGACCCACAA
...................((---((....((((....)))).((((((((((..(((((..........)))))..))))))))))..........))))....... ( -16.40)
>DroYak_CAF1 30017 105 - 1
UCAAAAACAAACACGACCAUC---AUCCUCCCACACAAGUGGUUAAUGCAAAAGUUUUGUCCCAAUAUUUACAAAUGUUUUGCGUUGUAAUAAAUAAAUGACCCACAA
...................((---((....((((....)))).((((((((((..(((((..........)))))..))))))))))..........))))....... ( -16.40)
>DroAna_CAF1 26804 96 - 1
-------UUAAAA----UGUCAACAUCCUGCCGCACAAGUGGUUAAUGCAAAAGUUUUGUU-CAAUAUUUACAAACGUUCUUGGUUGUAAUAAGUAAGUGACCCAGAA
-------.(((((----(.....(((...(((((....)))))..))).....))))))..-...............((((.(((..(.........)..))).)))) ( -15.20)
>DroPer_CAF1 39190 84 - 1
UC---------------------CCUGCG--CCGACAAGUACUUAAUGCAAAAGUUUUGUUCCAAUAUUUACAAAUGUUUUGCGUUGUAAUAAAUAAAUGAAGUACA-
..---------------------......--.......(((((((((((((((..(((((..........)))))..))))))))))..............))))).- ( -14.73)
>consensus
UC_____CAAACA____CAUC__CAUCCUCCCACACAAGUGGUUAAUGCAAAAGUUUUGUCCCAAUAUUUACAAAUGUUUUGCGUUGUAAUAAAUAAAUGACCCACAA
......................................((((.((((((((((..(((((..........)))))..))))))))))...............)))).. ( -9.94 = -10.06 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:23 2006