Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,971,030 – 1,971,139 |
Length | 109 |
Max. P | 0.916445 |
Location | 1,971,030 – 1,971,139 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 90.48 |
Mean single sequence MFE | -28.23 |
Consensus MFE | -20.37 |
Energy contribution | -22.03 |
Covariance contribution | 1.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.58 |
Structure conservation index | 0.72 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.606434 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1971030 109 + 22407834 A---GGUAGCUUUUAGUGCAAUAUUUAGAUCUAUUCUUGUAAGUCGAAGACUCGUUUGUCCAUCAUUGAGGUCUACUGAUGAUAGAUCUAAGUCUUUAAAGCCACCAAAAUA .---(((.(((((.((......(((((((((((((......(((.((...((((..((.....)).)))).)).)))...)))))))))))))))..))))).)))...... ( -27.50) >DroSec_CAF1 13477 112 + 1 AGAUGGUAGCUUUUAGUGCAAUAUUUAGAUCUAGUCUUGUAUGUCCCAGACUGGCUUUUCCAUCAUUAAGGACUACUGACGAAAGAUCUAAGUCUUUAAAACCACCAAUAUA .(.((((.((.......))...((((((((((.(((..(((.((((..((.(((.....))))).....))))))).)))...)))))))))).......)))).)...... ( -26.90) >DroSim_CAF1 17523 112 + 1 AGAUGGUAGCUUUUAGUGCAAUAUUUAGAUCUAGUCUUGUAUGUCCCAGACUGGCUUUUCCAUCAUUAAGGACUACUGACGAAAGAUCUAAGUCUUUAAAGCCACCAAUAUA ...((((.(((((.((......((((((((((.(((..(((.((((..((.(((.....))))).....))))))).)))...))))))))))))..))))).))))..... ( -30.30) >consensus AGAUGGUAGCUUUUAGUGCAAUAUUUAGAUCUAGUCUUGUAUGUCCCAGACUGGCUUUUCCAUCAUUAAGGACUACUGACGAAAGAUCUAAGUCUUUAAAGCCACCAAUAUA ....(((.(((((.((......((((((((((.(((..(((.((((..((.(((.....))))).....))))))).)))...))))))))))))..))))).)))...... (-20.37 = -22.03 + 1.67)
Location | 1,971,030 – 1,971,139 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 90.48 |
Mean single sequence MFE | -30.77 |
Consensus MFE | -24.24 |
Energy contribution | -24.80 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.06 |
Mean z-score | -3.49 |
Structure conservation index | 0.79 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.916445 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1971030 109 - 22407834 UAUUUUGGUGGCUUUAAAGACUUAGAUCUAUCAUCAGUAGACCUCAAUGAUGGACAAACGAGUCUUCGACUUACAAGAAUAGAUCUAAAUAUUGCACUAAAAGCUACC---U ......(((((((((.((...(((((((((((((((...(....)..))))))......(((((...))))).......)))))))))...))......)))))))))---. ( -27.30) >DroSec_CAF1 13477 112 - 1 UAUAUUGGUGGUUUUAAAGACUUAGAUCUUUCGUCAGUAGUCCUUAAUGAUGGAAAAGCCAGUCUGGGACAUACAAGACUAGAUCUAAAUAUUGCACUAAAAGCUACCAUCU .....((((((((((.((...((((((((...(((.((((((((....(((((.....))).)).))))).)))..))).))))))))...))......))))))))))... ( -31.30) >DroSim_CAF1 17523 112 - 1 UAUAUUGGUGGCUUUAAAGACUUAGAUCUUUCGUCAGUAGUCCUUAAUGAUGGAAAAGCCAGUCUGGGACAUACAAGACUAGAUCUAAAUAUUGCACUAAAAGCUACCAUCU .....((((((((((.((...((((((((...(((.((((((((....(((((.....))).)).))))).)))..))).))))))))...))......))))))))))... ( -33.70) >consensus UAUAUUGGUGGCUUUAAAGACUUAGAUCUUUCGUCAGUAGUCCUUAAUGAUGGAAAAGCCAGUCUGGGACAUACAAGACUAGAUCUAAAUAUUGCACUAAAAGCUACCAUCU ......(((((((((.((...(((((((((((((((...........)))))))......(((((.(......).)))))))))))))...))......))))))))).... (-24.24 = -24.80 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:34 2006