Locus 6719

Sequence ID 2L_DroMel_CAF1
Location 18,755,889 – 18,755,984
Length 95
Max. P 0.788284
window10729

overview

Window 9

Location 18,755,889 – 18,755,984
Length 95
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 85.28
Mean single sequence MFE -30.53
Consensus MFE -26.40
Energy contribution -26.37
Covariance contribution -0.02
Combinations/Pair 1.23
Mean z-score -1.81
Structure conservation index 0.86
SVM decision value 0.58
SVM RNA-class probability 0.788284
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18755889 95 - 22407834
GAUUGCCGGGCACUCGGCCAGGCUAACUCCGACUAACUGUUGUUCAUAACCAUGCUGAGUGAUUGGGCAGACUUUUGGCU--UUCAAAUGCUCUUAC---
..(((((.((((((((((..((.((....((((.....))))....)).))..)))))))).)).)))))......(((.--.......))).....--- ( -27.50)
>DroPse_CAF1 27953 97 - 1
GGCAGGCAGGCAGUCGGCCAA---AACUCUAGCUAACUGUAGUUCAUAACUUGGCUGAAUGAUUGGGCAGACUUUUGGCUUUUUCAAGUGCCCUAAAACA
(((((((.....)))((((((---((.(((.(((....((.(((((.........))))).))..)))))).))))))))........))))........ ( -25.20)
>DroSec_CAF1 19307 95 - 1
GAUUGCCGGGCACUCGGCCAGGCUAACUCCGACUAACUGUUGUUCAUAACCUGGCUGAGUGAUUGGGCAGACUUUUGGCU--UUCAAAUGCUCUUAU---
..(((((.((((((((((((((.((....((((.....))))....)).)))))))))))).)).)))))......(((.--.......))).....--- ( -36.90)
>DroEre_CAF1 19657 95 - 1
GAUUGCCGGGCACUCGGCCAGGCUAACUCCGACUAACUGUUGUUCAUAACUUGGCUGAGUGAUUGGGCAGACUUUUGGCU--UUCAAAUGCUCUAAC---
..(((((.((((((((((((((.((....((((.....))))....)).)))))))))))).)).)))))......(((.--.......))).....--- ( -34.20)
>DroYak_CAF1 19654 95 - 1
GAUUGCCGGGCACUCGGCCAGGCUAACUCCGACUAACUGUUGUUCAUAACUUGGCUGAGUGAUUGGGCAGACUUUUGGCU--UUCAAGUGCUCUUAC---
..(((((.((((((((((((((.((....((((.....))))....)).)))))))))))).)).)))))......(((.--.......))).....--- ( -34.20)
>DroPer_CAF1 27436 97 - 1
GGCAGGCAGGCAGUCGGCCAA---AACUCUAGCUAACUGUAGUUCAUAACUUGGCUGAAUGAUUGGGCAGACUUUUGGCUUUUUCAAGUGCCCUAAGACA
(((((((.....)))((((((---((.(((.(((....((.(((((.........))))).))..)))))).))))))))........))))........ ( -25.20)
>consensus
GAUUGCCGGGCACUCGGCCAGGCUAACUCCGACUAACUGUUGUUCAUAACUUGGCUGAGUGAUUGGGCAGACUUUUGGCU__UUCAAAUGCUCUAAC___
..........((((((((((((.......((((.....)))).......))))))))))))...(((((....(((((.....))))))))))....... (-26.40 = -26.37 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:20 2006