| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,753,792 – 18,753,894 |
| Length | 102 |
| Max. P | 0.793685 |
| Location | 18,753,792 – 18,753,894 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.05 |
| Mean single sequence MFE | -27.38 |
| Consensus MFE | -20.24 |
| Energy contribution | -20.27 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.793685 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18753792 102 + 22407834 ----GCCC----AGGCA-CAACAUGUUGGUGGAAAUUUAUGUCAUCCCUUGUUGUCGUGUUGAAUCUUACGAUGACAUUUCCAACAUAAUUUAGACCCACGCACGG---------AGAGA ----..((----..((.-(((....)))((((....((((((.......(((..(((((........)))))..)))......)))))).......))))))..))---------..... ( -24.72) >DroVir_CAF1 35099 106 + 1 ----GUGGCAACACACA-CAUGAUGUUGGUGGAAAUUUAUGUCAUCCCUUGUUGUCGUGUUGAAUCUUACGAUGACAUUUCCAACAUAAUUUAAGCCCACGCAUCG---------CUGCA ----(((....)))...-((((((((.(((..(((((.((((.......(((..(((((........)))))..)))......)))))))))..)))...))))))---------.)).. ( -30.12) >DroGri_CAF1 29530 102 + 1 ----GUGGCAAC----A-CAUGAUGUUGGUGGAAAUUUAUGUCAUCCCUUGUUGUCGUGUUGAAUCUUACGAUGACAUUUCCAACAUAAUUUAAGCCCACGCAUCG---------GGCCA ----(((....)----)-)...(((((((.(((...........)))..(((..(((((........)))))..)))...))))))).......((((.......)---------))).. ( -31.10) >DroMoj_CAF1 36124 102 + 1 ----GUGGCACC----A-CAUGAUGUUGGUGGAAAUUUAUGUCAUCCCUUGUUGUCGUGUUGAAUCUUACGAUGACAUUUUCAACAUAAUUUAAGCCCACGCAUCG---------CUUCA ----(((....)----)-)..(((((.(((..(((((.((((.......(((..(((((........)))))..)))......)))))))))..)))...))))).---------..... ( -27.82) >DroAna_CAF1 15458 98 + 1 ----AAGCGAAAAUCCA-CAACAUGUUGGUGGAAAUUUAUGUCAUCCCUUGUUGUCGCGUUGAAUCUUACGAUGACAUUUCCAACAUAAUUUAAGCCCACGCA----------------- ----..(((....((((-(((....)).)))))...((((((.......(((..(((............)))..)))......))))))..........))).----------------- ( -20.32) >DroPer_CAF1 25865 116 + 1 CGUUGGCC----UGGCACCAACAUGUUGGUGGAAAUUUAUGUCAUCCCUUGUUGUCGUGUUGAAUCUUACGAUGACAUUUCCAACAUAAUUUAAGCCCACGCACGCCACAGAGCAAGAGA (((.(((.----...((((((....)))))).....((((((.......(((..(((((........)))))..)))......)))))).....))).)))...((......))...... ( -30.22) >consensus ____GUGCCAACA__CA_CAACAUGUUGGUGGAAAUUUAUGUCAUCCCUUGUUGUCGUGUUGAAUCUUACGAUGACAUUUCCAACAUAAUUUAAGCCCACGCAUCG_________AGACA ........................((.(((..(((((.((((.......(((..(((((........)))))..)))......)))))))))..))).)).................... (-20.24 = -20.27 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:18 2006