| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,744,060 – 18,744,172 |
| Length | 112 |
| Max. P | 0.898596 |
| Location | 18,744,060 – 18,744,172 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 78.60 |
| Mean single sequence MFE | -29.91 |
| Consensus MFE | -16.68 |
| Energy contribution | -18.18 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.56 |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.898596 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18744060 112 - 22407834 AGUUAACUCGGUUUUGGUGUGCUUUUAUUGAUUU-------AUUUGCCGGGGCGACACAAGUUGGCAUCAUUAAGUGCCAGCACACACCGUUCUCUAUUAGCCGACAAAUUCUUGGCCU .......((((((.(((((((.............-------..((((....)))).....((((((((......)))))))).))))))).........)))))).............. ( -31.10) >DroPse_CAF1 16171 101 - 1 -----------UGUGUGUGUGUUUUUAUUGAUUU-------AUUUGUUGGGGAGACACAAGUUGGCAUCAUUAAGUGCCGACACACACCAUUCUCUAUUAGCCGACAAAUUCUUGGCCU -----------.((((((((((((((.(..((..-------....))..)))))))))..((((((((......))))))))))))))............(((((.......))))).. ( -32.30) >DroSim_CAF1 7897 112 - 1 AGUUAACUCGGUUUUGGUGUGCUUUUAUUGAUUU-------AUUUGCCGCGGCGACACAAGUUGGCAUCAUUAAGUGCCAGCACACACCGUUCUCUAUUAGCCGACAAAUUCUUGGCCU .......((((((.(((((((.............-------..((((....)))).....((((((((......)))))))).))))))).........)))))).............. ( -31.10) >DroMoj_CAF1 23703 105 - 1 UUUUAAAUUGA----------UUUUUAUUUAUUUAUAUUGGAUUUAUCGGGCCGGCACAAGUUGGCAUCAUUAAGUGC----GCUCGCCAUUCUCUAUUAGCCGACAAAUUCUUGGCCU ...(((((.((----------(....))).)))))....((((((.((((((((((....))))))........(.((----....)))............)))).))))))....... ( -20.50) >DroAna_CAF1 6259 99 - 1 -----------ACUUGGUGUGCUGUUAUUGAUUU-------AUUUGCCGCGGCGACACUCGUUGGCAUCAUUAAGUGCCAGCA--CACCGUUCUCUAUUAGCCGACAAAUUCUUGGCCU -----------....(((((((((.((((.....-------...(((((..(((.....))))))))......)))).)))))--))))...........(((((.......))))).. ( -32.14) >DroPer_CAF1 15516 101 - 1 -----------UGUGUGUGUGUUUUUAUUGAUUU-------AUUUGUUGGGGAGACACAAGUUGGCAUCAUUAAGUGCCGACACACACCAUUCUCUAUUAGCCGACAAAUUCUUGGCCU -----------.((((((((((((((.(..((..-------....))..)))))))))..((((((((......))))))))))))))............(((((.......))))).. ( -32.30) >consensus ___________UGUUGGUGUGCUUUUAUUGAUUU_______AUUUGCCGGGGCGACACAAGUUGGCAUCAUUAAGUGCCAGCACACACCAUUCUCUAUUAGCCGACAAAUUCUUGGCCU ................(((((.............................(....)....((((((((......)))))))).)))))............(((((.......))))).. (-16.68 = -18.18 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:13 2006