Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,743,747 – 18,743,860 |
Length | 113 |
Max. P | 0.999014 |
Location | 18,743,747 – 18,743,842 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 94.49 |
Mean single sequence MFE | -28.04 |
Consensus MFE | -25.04 |
Energy contribution | -25.64 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.32 |
Structure conservation index | 0.89 |
SVM decision value | 3.33 |
SVM RNA-class probability | 0.999014 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18743747 95 - 22407834 CCAGUGAGCAGUGAGCAGUGUUCAGUUGCCAACUAGAAACUGGCAACAAUCAACUGGCGCAUGUGCCACACGGCGUAUGCUUAAUUACGAACAAG ((((((((((.(....).))))).(((((((.........))))))).....))))).(((((((((....)))))))))............... ( -33.10) >DroSec_CAF1 7414 88 - 1 CCAGUGA-------GCAGUGUUCAGUUGCCAACUAGAAACUGGCAACAAUCAACUGGCGCAUGUGCCACACGGCGUAUGCUUAAUUACGAACAAG (((((((-------((...)))).(((((((.........))))))).....))))).(((((((((....)))))))))............... ( -29.30) >DroSim_CAF1 7590 88 - 1 CCCGUGA-------GCAGUGUUCAGUUGCCAACUAGAAACUGGCAACAAUCAACCGGCGCAUGUGCCACACGGCGUAUGCUUAAUUACGAACAAG ..(((((-------((..((....(((((((.........)))))))...))....))(((((((((....)))))))))....)))))...... ( -28.10) >DroEre_CAF1 7615 88 - 1 CCAGUGA-------GCAGUGUUCAGCUGCCAACUAGAAACUGGCAACAAUCAACUGGCGCAUGUGCCACACGGCGUAUGCUUAAUUACGAACAAG (((((((-------(((((.....)))))...........((....)).)).))))).(((((((((....)))))))))............... ( -26.70) >DroYak_CAF1 7504 88 - 1 CCAUUGA-------GCAGUGUUCAGCUGCCAACUAGAAACUGGCUACAAUCAACUGGCGCAUGUGCCACACGGCGUAUGCUUAAUUACGAACAAG (((((((-------(((((.....)))))...((((...))))......)))).))).(((((((((....)))))))))............... ( -23.00) >consensus CCAGUGA_______GCAGUGUUCAGUUGCCAACUAGAAACUGGCAACAAUCAACUGGCGCAUGUGCCACACGGCGUAUGCUUAAUUACGAACAAG ..................(((((.(((((((.........)))))))...........(((((((((....)))))))))........))))).. (-25.04 = -25.64 + 0.60)
Location | 18,743,762 – 18,743,860 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 93.82 |
Mean single sequence MFE | -32.08 |
Consensus MFE | -26.98 |
Energy contribution | -27.62 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.04 |
Mean z-score | -1.73 |
Structure conservation index | 0.84 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.927702 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18743762 98 - 22407834 UUGUUGGCAUCCCAGUGCCCAGUGAGCAGUGAGCAGUGUUCAGUUGCCAACUAGAAACUGGCAACAAUCAACUGGCGCAUGUGCCACACGGCGUAUGC .(((((((((....((((((((((((((.(....).))))).(((((((.........))))))).....))))).)))))))))).)))........ ( -36.20) >DroSec_CAF1 7429 91 - 1 UUGUUGGCAUCCCAGUGCCCAGUGA-------GCAGUGUUCAGUUGCCAACUAGAAACUGGCAACAAUCAACUGGCGCAUGUGCCACACGGCGUAUGC .(((((((((....(((((((((((-------((...)))).(((((((.........))))))).....))))).)))))))))).)))........ ( -32.40) >DroSim_CAF1 7605 91 - 1 UUGUUGGCAUCCCAGUGCCCCGUGA-------GCAGUGUUCAGUUGCCAACUAGAAACUGGCAACAAUCAACCGGCGCAUGUGCCACACGGCGUAUGC .....(((((....)))))((((((-------((...)))))(((((((.........))))))).......))).(((((((((....))))))))) ( -31.30) >DroEre_CAF1 7630 91 - 1 UGGCUGGCAUCCCAGUGCCCAGUGA-------GCAGUGUUCAGCUGCCAACUAGAAACUGGCAACAAUCAACUGGCGCAUGUGCCACACGGCGUAUGC ..(((((....)))))(((.(((((-------(((((.....)))))...........((....)).)).))))))(((((((((....))))))))) ( -32.10) >DroYak_CAF1 7519 91 - 1 UUGUUGGCAUCCCAGUGCCCAUUGA-------GCAGUGUUCAGCUGCCAACUAGAAACUGGCUACAAUCAACUGGCGCAUGUGCCACACGGCGUAUGC ..(((((....(((((.....(((.-------(((((.....))))))))......)))))......)))))....(((((((((....))))))))) ( -28.40) >consensus UUGUUGGCAUCCCAGUGCCCAGUGA_______GCAGUGUUCAGUUGCCAACUAGAAACUGGCAACAAUCAACUGGCGCAUGUGCCACACGGCGUAUGC ..((.(((((....)))))..............((((.....(((((((.........))))))).....))))))(((((((((....))))))))) (-26.98 = -27.62 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:12 2006