Locus 6710

Sequence ID 2L_DroMel_CAF1
Location 18,742,520 – 18,742,619
Length 99
Max. P 0.837414
window10716

overview

Window 6

Location 18,742,520 – 18,742,619
Length 99
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 89.57
Mean single sequence MFE -37.00
Consensus MFE -31.60
Energy contribution -31.20
Covariance contribution -0.40
Combinations/Pair 1.07
Mean z-score -1.56
Structure conservation index 0.85
SVM decision value 0.74
SVM RNA-class probability 0.837414
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18742520 99 - 22407834
AAU---GCGGCGGCUGUGCAAAAUCAAGAGUGUGUCUAAGCCAUGGCAAUCCAGGCAUCGGGCCAACAGAGCCACCAGGCACAUUGCCUUGCCAGUGGACCG-------
...---.((((.((((.((((...((...((((((((..(((.(((....))))))....((((....).)))...))))))))))..)))))))).).)))------- ( -34.80)
>DroSec_CAF1 6160 99 - 1
AAU---GCGGCGGCUGUGCAAAAUCAAGAGUGUGUCUAAGCCAUGGCAAUCCAGGCAUCGGGCCAACAGAGCCACCAGGCACAUUGCCUUGCCAGUGGACCG-------
...---.((((.((((.((((...((...((((((((..(((.(((....))))))....((((....).)))...))))))))))..)))))))).).)))------- ( -34.80)
>DroSim_CAF1 6329 99 - 1
AAU---GCGGCGGCUGUGCAAAAUCAAGAGUGUGUCUAAGCCAUGGCAAUCCAGGCAUCGGACCAACAGAGCCACCAGGCACAUUGCCUUGCCAGUGGACCG-------
...---.((((.((((.((((...((...((((((((..(((.(((....))))))...((..(....)..))...))))))))))..)))))))).).)))------- ( -32.40)
>DroEre_CAF1 6364 101 - 1
AU----GCGGCGGCUGUGCAAAAUCAAGAGUGUGUCUAAGCCACGGUA----AGGCAUCGGGCCACCAGAGCCACCAGGCACAUUGCCUUGCCAGUGGACUGGGCAGCC
..----..(((.(((.(.........).))).((((((..((((((((----(((((..((....))...(((....)))....))))))))).))))..))))))))) ( -41.10)
>DroYak_CAF1 6280 101 - 1
AUUCCGGCGGCGGCUGUGCAAAAUCAAGAGUGUGUCUAAGCCAUGGUA----AGGCAUCGGGCUACCAGAGCCACCAGGCACAUUGCCUUGCCAGUGGACCGGGC----
..((((((.((((((..(((...(....)...)))...)))).(((((----(((((..((....))...(((....)))....)))))))))))).).))))).---- ( -41.90)
>consensus
AAU___GCGGCGGCUGUGCAAAAUCAAGAGUGUGUCUAAGCCAUGGCAAUCCAGGCAUCGGGCCAACAGAGCCACCAGGCACAUUGCCUUGCCAGUGGACCG_______
.......((((.((((.((((...((...((((((((..((....))......(((.((.(.....).)))))...))))))))))..)))))))).).)))....... (-31.60 = -31.20 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:09 2006