Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,740,944 – 18,741,034 |
Length | 90 |
Max. P | 0.534975 |
Location | 18,740,944 – 18,741,034 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 84.90 |
Mean single sequence MFE | -28.68 |
Consensus MFE | -22.41 |
Energy contribution | -23.97 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.09 |
Mean z-score | -1.72 |
Structure conservation index | 0.78 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534975 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18740944 90 - 22407834 GCCAUUACGCCGCCCCCGCAUUUUCCGCAGAUGUUGCAGCCCUCGGCUAACUGUACACACAUUUGUCGCAUCGCA---GCGGCGGCAACAACG ........((((((...((.......))....(((((((((...))))...((((((......))).)))..)))---))))))))....... ( -27.70) >DroSec_CAF1 4582 75 - 1 --------------CCCGCAUUUUGCGCAGAUGUGGCAGCCCUCGGCUAACUUUACACACAUUUGUCGCAUCGCA----CGGCGGCAACAACG --------------.((((....((((((((((((..((((...)))).........)))))))).)))).....----..))))........ ( -23.70) >DroSim_CAF1 4725 90 - 1 GCCAUUACGCCGCCCCCGCAUUUUGCGCAGAUGUGGCAGCCCUCGGCUAACUGUACUCACAUUUGUCGCAUCGCA---GCGGCGGCAACAACG ........((((((.(.((....(((((((((((((.((((...))))........))))))))).))))..)).---).))))))....... ( -34.10) >DroEre_CAF1 4690 90 - 1 GCCAUUACGCCGCCCCCGCAUUUUCCGCAGAUGUGGCAGCCCUCGGCUAACUGUACACACAUUUGUCGCAUCGCA---GCGGCGGCAACAACG ........((((((...((.......)).((((((((((((...))))...(((....)))...))))))))...---..))))))....... ( -30.60) >DroYak_CAF1 4587 90 - 1 GCCAUUACGCCGCCCCCGCAUUUUCCGCAGAUGUGGCAGCCCUCGGCUAACUGUACACACAUUUGUCGCAUCGCU---GCGGCGGCAACAACG ........((((((..(((((((.....)))))))(((((...((((.((.(((....))).))))))....)))---))))))))....... ( -32.30) >DroAna_CAF1 4013 86 - 1 -------UGCCGCCCCCGCAAGUGUUGCAGAUGCCACAGCCCUCGGCUAACUGUACACACAAUUGUCGCAUCGCAUAAGCUGCAGCAACAAGC -------..........((...((((((.(((((.((((((...))))...(((....)))...)).)))))(((.....))).)))))).)) ( -23.70) >consensus GCCAUUACGCCGCCCCCGCAUUUUCCGCAGAUGUGGCAGCCCUCGGCUAACUGUACACACAUUUGUCGCAUCGCA___GCGGCGGCAACAACG ........((((((...((.......)).((((((((((((...))))...(((....)))...))))))))........))))))....... (-22.41 = -23.97 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:08 2006